PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf00824g05007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 225aa MW: 24555.6 Da PI: 4.8175

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00824g05007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9.1e-44	68	167	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lqq Peinf101Scf00824g05007.1 68 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQQ 152 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+aela++++e Peinf101Scf00824g05007.1 153 QISELQAELAKAQAE 167 *********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.738	67	168	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	68	165	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MECTSDKTNT TISSLSASSL INSSSNNYSS SPNSYPINIS SSTNSSGSIR STISTPPPSP 60 TVPVILTPCA ACKILRRRCV EKCVLAPYFP PTEPLKFTIA HRVFGASNII KMLQELPEEQ 120 RADAVNSMVY EANARIRDPV YGCAGAICQL QQQISELQAE LAKAQAEILN VQCQNSNLLA 180 LVCMEVSDRE NSSSLFPSDH HDYGNNNSLF LEDNSVYGAW EPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	59	173	2	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	59	173	2	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	2e-46	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	2e-46	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253003.1	1e-108	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	5e-73	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1J6I4S1	1e-107	A0A1J6I4S1_NICAT; Lob domain-containing protein 1
STRING	XP_009611728.1	1e-103	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-64	LOB domain-containing protein 1