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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peinf101Scf00808g00054.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family |
C2H2 |
Protein Properties |
Length: 383aa MW: 43252.6 Da PI: 8.7552 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peinf101Scf00808g00054.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C++ F r nL+ H r+H
Peinf101Scf00808g00054.1 19 YVCEICNQGFQRDQNLQMHRRRH 41
9*********************9 PP
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2 | zf-C2H2 | 16.3 | 2.7e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k + +s++k H++t+
Peinf101Scf00808g00054.1 96 WVCEKCSKGYAVQSDYKAHLKTC 118
58*******************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
PDAEVVSLSP KTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ETPIVRKRVF 60 VCPEPTCLHH DPCHALGDLV GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT 120 RGHSCDCGRV FSRVESFIEH QDACSMGRLR SESQSLHPPC LSRTASSTPS PSSDTNLTAP 180 WPSNLLKKNS IKEQHNLELQ LLTTTTSSSS PFDVSVSSKP NEDHSTYNLQ LSIGSSDFNE 240 SDQNATLSKN VSETRNLDAL KLAMSEKSYA EETRQQAKRQ IELAEQEFAN AKRIRQQAQA 300 ELDKANALKE HAIKQINSTL SQITCHSCKQ KFQAQRIVAS PTVPPSDHEN NSLALSYISS 360 ALTEGHHEVK NINQTEHLKL SQR
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975442 | 1e-111 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]
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