PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf00793g08016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 164aa MW: 18093.3 Da PI: 7.1352

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00793g08016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.8	1.3e-45	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca+dC +apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqq Peinf101Scf00793g08016.1 12 PCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHNRGDAVSSMVYEANARVRDPVYGCVGAISSLQQ 96 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q++ l+++la++++e Peinf101Scf00793g08016.1 97 QIDMLRTQLAVAQAE 111 ********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-45	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MKDCGKNSSS SPCAACKLLR RRCAQDCLFA PYFPADEPHK FANVHKVFGA SNVSKMLQEL 60 PEHNRGDAVS SMVYEANARV RDPVYGCVGA ISSLQQQIDM LRTQLAVAQA EVVHLRIRQS 120 VGTNNSPTNS GSASHILDAH PNGYFHTDLD EDQSKNFNEP MWPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	8	113	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	8	113	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783465.1	1e-101	PREDICTED: LOB domain-containing protein 4-like
Refseq	XP_016501014.1	1e-101	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	7e-64	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S4CJ26	2e-99	A0A1S4CJ26_TOBAC; LOB domain-containing protein 4-like
TrEMBL	A0A1U7XAI8	2e-99	A0A1U7XAI8_NICSY; LOB domain-containing protein 4-like
STRING	XP_009783465.1	1e-100	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-66	LOB domain-containing protein 4