PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00772g05002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 141aa    MW: 15960 Da    PI: 4.4203
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00772g05002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08757148
                              TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                              r +WT++  +l+ +  +q+ ++   +W  +ar +g g+++ ++k ++ ++l
  Peinf101Scf00772g05002.1  7 RSSWTPQQNKLFERPLAQFDKDtpdRWQNVARAVGGGKSADDVKRHYDNLL 57
                              789********************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.841257IPR017877Myb-like domain
SMARTSM007172.4E-6659IPR001005SANT/Myb domain
PfamPF002497.3E-6757IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-11865IPR009057Homeodomain-like
CDDcd001671.48E-4957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MASGSVRSSW TPQQNKLFER PLAQFDKDTP DRWQNVARAV GGGKSADDVK RHYDNLLEDL  60
RRIESGLVPL PSYTNRAAAE EQSIRVLCVS VTFGEEDKVC PFVVLPEYFV YVYGVIGEGA  120
VYWEGGEYLC IVLCDLDMYP W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-21173173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261955.13e-43PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1736e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6JJL57e-42A0A1J6JJL5_NICAT; Protein radialis-like 5
STRINGXP_009779120.19e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-28RAD-like 6