PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00766g06012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 332aa    MW: 38237.1 Da    PI: 8.3368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00766g06012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-12195220126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd CkF+H+
  Peinf101Scf00766g06012.1 195 YQPDICKDYKETGYCGYGDACKFMHD 220
                               67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-9193225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577194222IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7194221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-12195225IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.4E-13255313IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.25E-13271314No hitNo description
PfamPF139201.9E-8271312No hitNo description
PROSITE profilePS5008910.409272310IPR001841Zinc finger, RING-type
CDDcd001623.40E-8272313No hitNo description
SMARTSM001841.8E-4272309IPR001841Zinc finger, RING-type
PROSITE patternPS005180287296IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYGSRSKNLE IFFEINFMLN VCNFFKKPSK GKNIRKRPTI EQGENEDPEG KSYVVYTKKK  60
AAVADNRLHF STRPSKSHKP TEPNDDSKAL LFHFESSKEI QIQNDSRATA TLETETEFSK  120
DARAIRERAL KLEEESLKGK SKTGGDEKLY KGMNQYTDFK AGLRREHTIS NEKAGGAHGP  180
LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDACKFMHD RGDYKSGWQL EKEWDEAEKE  240
RKRKLAMGML DEDDEDAEKS DKDDDDSLPF ACFICRQPFV DPVVTKCKHY FCEHCALKHH  300
AKNKKCFVCN QPTLGLFNTA FEIRKRMVDQ GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-682032713317RING finger protein 113A
5z58_M2e-682032713317RING finger protein 113A
6ff4_t2e-682032713317RING finger protein 113A
6ff7_t2e-682032713317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-150C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY70.0A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-145C3H family protein