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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf00766g06012.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
C3H |
| Protein Properties |
Length: 332aa MW: 38237.1 Da PI: 8.3368 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf00766g06012.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 37.7 | 3.5e-12 | 195 | 220 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd CkF+H+
Peinf101Scf00766g06012.1 195 YQPDICKDYKETGYCGYGDACKFMHD 220
67789********************7 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 3.27E-9 | 193 | 225 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.577 | 194 | 222 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-7 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-12 | 195 | 225 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.0E-10 | 195 | 220 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.40.10 | 1.4E-13 | 255 | 313 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SuperFamily | SSF57850 | 6.25E-13 | 271 | 314 | No hit | No description |
| Pfam | PF13920 | 1.9E-8 | 271 | 312 | No hit | No description |
| PROSITE profile | PS50089 | 10.409 | 272 | 310 | IPR001841 | Zinc finger, RING-type |
| CDD | cd00162 | 3.40E-8 | 272 | 313 | No hit | No description |
| SMART | SM00184 | 1.8E-4 | 272 | 309 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 287 | 296 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MYGSRSKNLE IFFEINFMLN VCNFFKKPSK GKNIRKRPTI EQGENEDPEG KSYVVYTKKK 60
AAVADNRLHF STRPSKSHKP TEPNDDSKAL LFHFESSKEI QIQNDSRATA TLETETEFSK 120
DARAIRERAL KLEEESLKGK SKTGGDEKLY KGMNQYTDFK AGLRREHTIS NEKAGGAHGP 180
LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDACKFMHD RGDYKSGWQL EKEWDEAEKE 240
RKRKLAMGML DEDDEDAEKS DKDDDDSLPF ACFICRQPFV DPVVTKCKHY FCEHCALKHH 300
AKNKKCFVCN QPTLGLFNTA FEIRKRMVDQ GK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5z56_M | 2e-68 | 20 | 327 | 13 | 317 | RING finger protein 113A |
| 5z58_M | 2e-68 | 20 | 327 | 13 | 317 | RING finger protein 113A |
| 6ff4_t | 2e-68 | 20 | 327 | 13 | 317 | RING finger protein 113A |
| 6ff7_t | 2e-68 | 20 | 327 | 13 | 317 | RING finger protein 113A |
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