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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00736g27002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRF | ||||||||
Protein Properties | Length: 543aa MW: 58787.3 Da PI: 8.6088 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 156 | 200 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Peinf101Scf00736g27002.1 156 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 200 79****************************************985 PP | |||||||
2 | QLQ | 63.2 | 6.8e-22 | 88 | 124 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+Pp+Ll +i+k Peinf101Scf00736g27002.1 88 GPFTPSQWMELEHQALIYKYIVANVPIPPYLLNPIRK 124 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-12 | 88 | 124 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.81 | 89 | 124 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-16 | 89 | 123 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 156 | 200 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.3E-21 | 157 | 199 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDFGLDSGGG VICSDNSNMF TSVETKQKLY GSVGLYKHER STEDEYWNNK DNKLAKISPL 60 LMRSTNESCG SGGMNAGNMH GVIAGIKGPF TPSQWMELEH QALIYKYIVA NVPIPPYLLN 120 PIRKALESAG FSTLAGLRPN AFGWGAFHLG FSNSNDPEPG RCRRTDGKKW RCSRDAVADQ 180 KYCERHMNRG RHRSRKPVEG QTGNSASGNT SATSAKLMNI SSSASAALAP GGAASNTLGL 240 SHNHQLSNLQ PAGTNPSTTS TFLERSYTAK ENFGERYSDT KGPTIVSPSV KESQYSTQKE 300 HNLYGETSRA EFGLVCADSL INPLNKNSSL VNCRGYGNSG SISDQERKSQ HHPLRQFMDD 360 WPKNQSDQSN VSWPKIDLQS DRTQLSISIP VVTSDFMSST SSPVNDKLTA SPHRLSREHE 420 ATQMGLGIGT IVSEHNQRQG SWIPITWESS MGGPLGEVLH STNSSSSDCK NKSALNLMTE 480 GWDRSPRMLS SPTGVLQKAS FGSLSNSSAG SSPRAENSKT MNEGSSLCNG LGTILMNPTL 540 PAM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311867.1 | 0.0 | growth-regulating factor 1-like | ||||
TrEMBL | A0A2G3CPI7 | 0.0 | A0A2G3CPI7_CAPCH; Uncharacterized protein | ||||
STRING | Solyc04g077510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 8e-89 | growth-regulating factor 1 |