PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf00735g02002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 341aa MW: 38417.6 Da PI: 6.8324

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00735g02002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Peinf101Scf00735g02002.1 161 YECKTCNRTFPSFQALGGHRASH 183 99**********99999998887 PP
2	zf-C2H2	12.7	0.0004	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Peinf101Scf00735g02002.1 240 HECSYCGAEFASGQALGGHMRRH 262 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.2E-13	160	185	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.86E-9	160	183	No hit	No description
PROSITE profile	PS50157	10.408	161	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	161	183	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.86E-9	235	262	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-4	238	264	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.4E-12	240	264	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	240	262	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.221	240	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEALEEVVGV PNKDLFHIVK GKRTKRLRLQ SPIPFTVAAT HDSSNACDDH KNDTDNGEDV 60 PHNNNNNNSD NNASPSSAPS AEMFINTFTE DEEETARYLI LMSKCDDHLH PRNKSRDGLP 120 PDKFELFNDD LKLYQSKFNS KRYIETSTNL GNGTKAGIFV YECKTCNRTF PSFQALGGHR 180 ASHKKPKILT TELVNNKKLY FDFSDEDDQP SPSTTLCKTN KDVNRILPNS TNKYTSPRIH 240 ECSYCGAEFA SGQALGGHMR RHRGGVNLNS SLHLSNYVSP ATSIDQEFAN NTMKKVPRDG 300 LSLDLNLPVS DDNLDPKYPV FSLKQQDQEK TQRQQLVDCH Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB000452	0.0	AB000452.1 Petunia x hybrida mRNA for PEThy;ZPT2-6, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587785.1	1e-141	PREDICTED: putative uncharacterized protein DDB_G0287457
TrEMBL	P93714	0.0	P93714_PETHY; PEThy;ZPT2-6
STRING	XP_009587785.1	1e-141	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-43	C2H2 family protein