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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00723g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 328aa MW: 36132.7 Da PI: 10.0609 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.7e-32 | 183 | 237 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++IlkRRq Rakle+++kl k rkpylheSRh+hA++R+RgsgGrF Peinf101Scf00723g00010.1 183 PIYVNAKQYSAILKRRQVRAKLEAQNKL-VKDRKPYLHESRHRHAMKRARGSGGRF 237 9***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 23 | No hit | No description |
SMART | SM00521 | 1.0E-36 | 179 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.462 | 180 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.6E-28 | 183 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.5E-24 | 183 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 185 | 205 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.5E-24 | 214 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MLSFSKRGGP GKGQSFTPLF VSCSSMWNSS ELPEHVPPKS TLTAKESVVK HLPDAKKPKS 60 QFQDQDSTST LSTGEPNQVE AAMTKSITFL QNVAPHPGWG GMFEVQAESG TKAALSGENA 120 TNTLPQPLVH QNHPTACVSY PWADTYFGRL MATYGSNAII YPQMVGVTST RVALPLECTE 180 SLPIYVNAKQ YSAILKRRQV RAKLEAQNKL VKDRKPYLHE SRHRHAMKRA RGSGGRFLNT 240 KNMQQSRPSS PKYDKNIFKR HTGGNFSSSM VQHSESGSWG TSTQSGSDVT SIFSGDDMFQ 300 QPEFRVSGFP FHMGATMQEA EDFMRGGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-22 | 183 | 242 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 230 | RHRHAMKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ865409 | 0.0 | KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome. | |||
GenBank | KJ865410 | 0.0 | KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351613.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-8-like | ||||
Swissprot | Q93ZH2 | 1e-47 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A0V0I706 | 0.0 | A0A0V0I706_SOLCH; Putative nuclear transcription factor Y subunit A-8-like | ||||
STRING | Solyc08g062210.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4800 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 2e-45 | nuclear factor Y, subunit A8 |