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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Peinf101Scf00719g04004.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 351aa MW: 39577.8 Da PI: 9.4876 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf00719g04004.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 374.2 | 2.3e-114 | 29 | 351 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78
mdd+g+++ r+k+ + + ++ +s+ +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a++ern+a++erd
Peinf101Scf00719g04004.1 29 MDDSGHHDngRHKPpQSQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAITERNNAIMERD 108
999999988999983322333222444.....4**************************************************** PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
n++++l+++e s+ +g q+++g+++++++qq +++ +++++++++ r+++++e++p++ aa e +k+++++rak+pk+
Peinf101Scf00719g04004.1 109 NAIASLQYRESSM-----SGGQIVHGVEHMHHHQQhVHHqKHMGEPTYNHRDMHMNESMPVSPAA---LEPTKPRRNKRAKEPKA 185
********99984.....57789**********996444689******************88755...45555555556666666 PP
GAGA_bind 162 kkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtG 217
+ +kk+ k + kkvk+e++d + sk ++k++dl+ln+v++D++t+PvPvCsCtG
Peinf101Scf00719g04004.1 186 VTDSKKTPKAS---KKVKRETEDLNqttfgksqewngaqemgaasddlnrqlvvSKPDWKDQDLGLNQVAFDDTTMPVPVCSCTG 267
65554444333...3333333331123466778899************************************************* PP
GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
a r CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG dlsnpvDLk+hWAkHGtn+++ti+
Peinf101Scf00719g04004.1 268 AVRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGNDLSNPVDLKNHWAKHGTNRYITIK 351
***********************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MLVKQRALSN IVMLLAETDF DGNYHIYHMD DSGHHDNGRH KPPQSQWLMQ HQPSMKQIMA 60
IMAERDAAIQ ERNLALSEKK AALAERDMAI LQRDSAITER NNAIMERDNA IASLQYRESS 120
MSGGQIVHGV EHMHHHQQHV HHQKHMGEPT YNHRDMHMNE SMPVSPAALE PTKPRRNKRA 180
KEPKAVTDSK KTPKASKKVK RETEDLNQTT FGKSQEWNGA QEMGAASDDL NRQLVVSKPD 240
WKDQDLGLNQ VAFDDTTMPV PVCSCTGAVR PCYKWGNGGW QSSCCTTNLS MYPLPAVPNK 300
RHARIGGRKM SGSAFTKLLS RLAAEGNDLS NPVDLKNHWA KHGTNRYITI K
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ808724 | 0.0 | KJ808724.1 Nicotiana tabacum GAGA-binding transcriptional activator mRNA, complete cds. |
