PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00692g22006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 407aa    MW: 44735.8 Da    PI: 8.2507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00692g22006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-067095226
                              -S---SGGGGTS..--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartG..tCkyGdrCkFaHg 26
                              k + C+f+ + G   C+ G+ C+F H+
  Peinf101Scf00692g22006.1 70 KAVVCKFWVQ-GdnKCRNGNDCRFLHS 95
                              6689******.88*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.873632IPR000571Zinc finger, CCCH-type
SMARTSM003560.35631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2776897IPR000571Zinc finger, CCCH-type
SMARTSM003560.00236896IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-56995IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-47095IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-47095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.1E-996173IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.5E-5102141IPR001680WD40 repeat
SuperFamilySSF509782.75E-42105397IPR017986WD40-repeat-containing domain
PfamPF004002.5E-5105141IPR001680WD40 repeat
PROSITE profilePS5008213.282109150IPR001680WD40 repeat
PROSITE profilePS5029419.749109318IPR017986WD40-repeat-containing domain
PROSITE patternPS006780128142IPR019775WD40 repeat, conserved site
PRINTSPR003206.2E-6128142IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.101.1E-35174401IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.9181220IPR001680WD40 repeat
SMARTSM003208.7E-4231269IPR001680WD40 repeat
PfamPF004000.0083236269IPR001680WD40 repeat
PROSITE profilePS5008211.712238278IPR001680WD40 repeat
PRINTSPR003206.2E-6256270IPR020472G-protein beta WD-40 repeat
SMARTSM003207.8E-6272309IPR001680WD40 repeat
PfamPF004004.0E-4274308IPR001680WD40 repeat
PROSITE profilePS500828.737279318IPR001680WD40 repeat
PRINTSPR003206.2E-6296310IPR020472G-protein beta WD-40 repeat
SMARTSM00320270315356IPR001680WD40 repeat
SMARTSM003200.54359396IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSNKHQKATP VCVHWKAGRC TRFQCRFLHS ELQAPQQHNG IIMASTKGNP KFKNTWRNTT  60
AADGVVTAKK AVVCKFWVQG DNKCRNGNDC RFLHSWTTKN CGFTLLKQLE GHQKTVTGIA  120
LPESGGSLYS GSMDKTIRSW DCHSGQDAGV LNLDGEVGCM LSEGSWIFVG LTNHVKAQNT  180
QTGTLLSLNG PVFGQVYALV FSHNNLLLAG TANGNILAWK YNNNNGIGTF DQSVAGELKG  240
HANRVISLVV GGCDRLYSGS KDNSIRVWSL ETMQCLQVLK DHTSEVTSVL CWDQYLLSCS  300
LDKTIKVWAA KDSGNIEVIY THQEEHALLT LFGMNDSEAK PVLFCSCTDN TIRAYDLPAF  360
SERGKIFSKE PVRCIALGPA GLFFTGDESG HVRVWKWLTE SSTSTAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-18813958325Tako8
6g6n_A4e-18813958325Tako8
6g6n_B4e-18813958325Tako8
6g6n_C4e-18813958325Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564720.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-144C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1U8G0S60.0A0A1U8G0S6_CAPAN; zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A2G2X6G80.0A0A2G2X6G8_CAPBA; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A2G3CW390.0A0A2G3CW39_CAPCH; Zinc finger CCCH domain-containing protein 63
STRINGXP_009626305.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-138zinc finger WD40 repeat protein 1