PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00668g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 569aa    MW: 60688.7 Da    PI: 8.1375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00668g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-114569327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG C yG rC+F+H++
  Peinf101Scf00668g00011.1 45 EPDCIYYLRTGVCGYGTRCRFNHPR 69
                              589********************96 PP
2zf-CCCH35.12.2e-1191115327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G +Ck++H++
  Peinf101Scf00668g00011.1  91 QPVCQYYMRTGMCKFGTSCKYHHPR 115
                               689********************96 PP
3zf-CCCH35.61.6e-11182207227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C+++++tG+Ck+G +Ck++H++
  Peinf101Scf00668g00011.1 182 GEKECSYYMKTGQCKFGITCKYHHPQ 207
                               6789********************97 PP
4zf-CCCH35.51.6e-11351377127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C++++++G Ck+G++C+++H+p
  Peinf101Scf00668g00011.1 351 PGQPECQYYMKYGDCKFGSSCRYHHPP 377
                               5789*********************97 PP
5zf-CCCH35.31.9e-11399423327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C+++a++G Ck+G++CkF H++
  Peinf101Scf00668g00011.1 399 APICSHYAQNGVCKFGPSCKFDHPM 423
                               589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.314270IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-44269IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64672IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-54869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.41388116IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-688115IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-891115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-493115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295180208IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5180207IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9182207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6183208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464350378IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6350377IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8352377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5354377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6395422IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7396423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878396424IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8399423IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5401421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MESTQAMEQW TSPASDTDLQ GNAESMWQLS LGSGGPESYP ERANEPDCIY YLRTGVCGYG  60
TRCRFNHPRD RTSLVMGLRA TGGEYPERAG QPVCQYYMRT GMCKFGTSCK YHHPRQGGGS  120
STLVTHNIYG YPLRPVCLFF MFILFLLPPC CIIFHFFPCF SFNKFDHGSI FLILLIELLS  180
QGEKECSYYM KTGQCKFGIT CKYHHPQPAP QIPASVAGFG AFPSPAAVSP PATYPALQSP  240
SVQSAQQYGV VASNWPVARP TLLPGSYLPG TYGPMLFPPG LVPMPGWTPY QASGGPVPSP  300
IAQPAAGAAP VYGLTQLSAS APAYTGPYMS LTSSAGASGI IQREHALPEK PGQPECQYYM  360
KYGDCKFGSS CRYHHPPEWS GPKAGFILSA MGLPLRPGAP ICSHYAQNGV CKFGPSCKFD  420
HPMGISYSPS ASSLVDMPVA PYPVGSSVGT LAPSSSSSDL RPELVSGSSQ DAFSNQTSSM  480
SAPSGSVGSM FSKGGPAGAQ QSRQSSTSSI ASSSTGHEGE AHTSSFHKFA KSLLKDSNSV  540
LSFPELSPSI GKPETKTPVY NNIRTPNIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754455e-40HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267356.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-149C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KY390.0A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009802825.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-148C3H family protein