PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00653g06004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 21192 Da PI: 10.3577 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42 | 1.2e-13 | 13 | 55 | 5 | 47 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 n++ r + + R ++++KKAeE S+LC++e+ v++fs + + y Peinf101Scf00653g06004.1 13 NERSRMIVLQERSATLFKKAEEFSILCGVEIGVVVFSVEENQY 55 88999999*****************************887666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.974 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-17 | 1 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.76E-16 | 2 | 61 | No hit | No description |
PRINTS | PR00404 | 4.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-14 | 13 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MARKKLKIAR LVNERSRMIV LQERSATLFK KAEEFSILCG VEIGVVVFSV EENQYESVWP 60 SKEKFKQILM KYLDKPLTER LKKLSTHEKY LRKEVDAGMN NLKTIAKKTE EKQMEQLFNQ 120 LYAGEKTILE LDKRQLIGVH NLAIKMKEKV VERRKQLNVQ DQRAQLPVDD PLALRLAPPG 180 SL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616634.1 | 1e-76 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_016502248.1 | 1e-76 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S4CLZ8 | 3e-75 | A0A1S4CLZ8_TOBAC; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_009616634.1 | 5e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 5e-17 | AGAMOUS-like 92 |