PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 192aa MW: 22054.5 Da PI: 4.7779

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00650g24031.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.3	1.8e-37	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ ++ ae ++wyf+s++ + +r+t +gyW+ Peinf101Scf00650g24031.1 8 LPPGFRFYPTDEELVVHFLQRKASLLPCHP-DVIPDLDLYPYDPWDLDGNAMAEGNKWYFYSRKTR--------SRITGNGYWQP 83 79***********************999.99**********976667899**9866........6899*** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g d+++ls+ ++++vg+kk +fy+g+ +g+kt+W+m+eyrl Peinf101Scf00650g24031.1 84 LGVDEPILSTsSNHKVGMKKCYTFYTGEPTEGVKTNWIMQEYRL 127 ****9877888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-48	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	45.937	8	160	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA SLLPCHPDVI PDLDLYPYDP WDLDGNAMAE 60 GNKWYFYSRK TRSRITGNGY WQPLGVDEPI LSTSSNHKVG MKKCYTFYTG EPTEGVKTNW 120 IMQEYRLSDS SASGSRSSSR RRSHSKIDYN KWVVCRVYEC NGDNDDANSA ELSCLDEVFL 180 SLDDLDEITL QR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-39	4	159	13	164	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-39	4	159	13	164	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-39	4	159	13	164	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-39	4	159	13	164	NO APICAL MERISTEM PROTEIN
3swm_A	3e-39	4	159	16	167	NAC domain-containing protein 19
3swm_B	3e-39	4	159	16	167	NAC domain-containing protein 19
3swm_C	3e-39	4	159	16	167	NAC domain-containing protein 19
3swm_D	3e-39	4	159	16	167	NAC domain-containing protein 19
3swp_A	3e-39	4	159	16	167	NAC domain-containing protein 19
3swp_B	3e-39	4	159	16	167	NAC domain-containing protein 19
3swp_C	3e-39	4	159	16	167	NAC domain-containing protein 19
3swp_D	3e-39	4	159	16	167	NAC domain-containing protein 19
4dul_A	3e-39	4	159	13	164	NAC domain-containing protein 19
4dul_B	3e-39	4	159	13	164	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106335.1	1e-106	NAC domain-containing protein 104-like
Refseq	XP_027159802.1	1e-106	NAC domain-containing protein 104
Swissprot	Q8GWK6	3e-80	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A068TMB6	1e-105	A0A068TMB6_COFCA; Uncharacterized protein
STRING	XP_009622295.1	2e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-67	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]