PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00645g03015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 436aa MW: 47034 Da PI: 7.7111

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00645g03015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.4e-12	264	303	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RRd+iN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq Peinf101Scf00645g03015.1 264 KRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 303 8****************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-15	244	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-15	244	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-14	251	307	No hit	No description
SMART	SM00353	1.8E-12	252	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.811	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-9	264	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
LDYEVAELTW ENGQLAMHGL GPRTRVPNNK PISNYGDTLE SIVNQATRCN IPHHHLKSAV 60 DGHGHGGDEV VPWFNNHPAV SGTPPVTGGP ATLAMDALVP CSKNPATFNH HHRQSSSVHV 120 PGVDGSTHVG SCSGATADWM TAPRVSTMEP SSRGGGADMS VSGSATCSRQ LTIDTFDREM 180 GVTTTGMFTS TSMGSPENTS SDKQFTNRTG DDHDSVCHSR AQREAGDEED NKKGSKNSSS 240 STKRKRAAAI HNQSERVSIY VSLKRRDKIN QRMKTLQKLV PNSNKTDKAS MLDEVIDYLK 300 QLQAQVHMMS RMNMSPAMML AMQQQQLQMS MMGMGMGMGM GMGVAGVVDM NTLSRPNITG 360 LPPFLHPTAA AAFMQPMTSW PDSSTDRLTA AANVIPDPLA ALLACQSQPM TMDAYSRMAA 420 LYQQFQQPAT SSVPKN

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

LDYEVAELTW ENGQLAMHGL GPRTRVPNNK PISNYGDTLE SIVNQATRCN IPHHHLKSAV  60
DGHGHGGDEV VPWFNNHPAV SGTPPVTGGP ATLAMDALVP CSKNPATFNH HHRQSSSVHV  120
PGVDGSTHVG SCSGATADWM TAPRVSTMEP SSRGGGADMS VSGSATCSRQ LTIDTFDREM  180
GVTTTGMFTS TSMGSPENTS SDKQFTNRTG DDHDSVCHSR AQREAGDEED NKKGSKNSSS  240
STKRKRAAAI HNQSERVSIY VSLKRRDKIN QRMKTLQKLV PNSNKTDKAS MLDEVIDYLK  300
QLQAQVHMMS RMNMSPAMML AMQQQQLQMS MMGMGMGMGM GMGVAGVVDM NTLSRPNITG  360
LPPFLHPTAA AAFMQPMTSW PDSSTDRLTA AANVIPDPLA ALLACQSQPM TMDAYSRMAA  420
LYQQFQQPAT SSVPKN

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586991.1	0.0	PREDICTED: transcription factor UNE10 isoform X1
Swissprot	Q8GZ38	5e-91	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A1S4ALX7	0.0	A0A1S4ALX7_TOBAC; transcription factor UNE10-like
STRING	XP_009586991.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4367	21	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-73	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]