PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00634g04013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 174aa MW: 19824 Da PI: 5.4021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.4 | 1.7e-05 | 20 | 57 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ +++ eLr+l+ k +i + A+ YIk+Lq Peinf101Scf00634g04013.1 20 VAERKRRQKLSDRLLELRSLMTKE-----------TIITDAITYIKELQ 57 68*******************998...........8**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-11 | 10 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.27E-7 | 11 | 57 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-8 | 11 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-4 | 19 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDKRKQIAGE DREFKSKNLV AERKRRQKLS DRLLELRSLM TKETIITDAI TYIKELQMNV 60 NNLSEQLLDM DATLGEDLEI KNEEILDNAE EMSKWGIEPE VQVAHIGTNK LWIKIVCQKK 120 RGGFTKLMEA MNVLGFDLND TSVTSSKGAL LVVRGGLIEA HQITEFLLEI IHGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 26 | ERKRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00091 | SELEX | Transfer from AT4G21330 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773859.1 | 2e-98 | PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1 | ||||
Swissprot | O81900 | 2e-40 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A1U7WGU4 | 4e-97 | A0A1U7WGU4_NICSY; transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1 | ||||
STRING | XP_009773859.1 | 6e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9107 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 9e-43 | bHLH family protein |