PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Peinf101Scf00597g00028.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 186aa MW: 21299.3 Da PI: 6.4116

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00597g00028.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.9	2.6e-36	12	109	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l++ p ++reda+ s+vyeA ar+rdP+yG+vg+i++lq Peinf101Scf00597g00028.1 12 PCSACKLLRRRCTQDCIFLPHFPPTEPQKFIVVHRIFGASNISKFLQQEiPMNNREDAVISMVYEASARLRDPIYGSVGIISALQ 96 7*******************************************87648888*************************** PP DUF260 85 qqleqlkaelall 97 +++ +l++el+++ Peinf101Scf00597g00028.1 97 KHVFHLQTELNEA 109 *******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.112	11	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-37	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MDSTNKKNKH MPCSACKLLR RRCTQDCIFL PHFPPTEPQK FIVVHRIFGA SNISKFLQQE 60 IPMNNREDAV ISMVYEASAR LRDPIYGSVG IISALQKHVF HLQTELNEAL AEAMSLRTQL 120 SYAISLPSQL EGSPFTPEDH RLHHFQKPSE QYEYDNASDA LLLLPQAADH YYCLQETEVL 180 PQPFLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-38	12	114	11	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-38	12	114	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-67	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	2e-67	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503569.1	1e-112	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q8LBW3	4e-41	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S4CRC5	1e-110	A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRING	Solyc06g082770.2.1	8e-90	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-43	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]