PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00594g22021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 419aa    MW: 43262.1 Da    PI: 6.3482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00594g22021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11230275555
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Peinf101Scf00594g22021.1 230 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 275
                               99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.61E-13223279No hitNo description
SuperFamilySSF474594.71E-17223285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.409225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16227284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MQAAMNSLLS QQQMSLQELE TNNGGGSSSS SGQHMFDPTH DDFLEQILSS VPTSSPWPDL  60
SKPWDPHHHL TNPSSGDEQS PFHFDDQSTS LLASKLRQHQ ITSGGAAAKA LLLQQQLLLS  120
RTLAGNGGLR SPTGASAGGN GLLPLPLSLG NGDQNDGVGN PGNDSSVQAL FNGFTSGSLG  180
SMQAQSFGAP AMNQTPAASG SAGGGGTTAP AAQPKQQRVR ARRGQATDPH SIAERLRRER  240
IAERMKALQE LVPNGNKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVADMS  300
SEGRGEGNAG RGANGTASSS NNDTMTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA  360
TAISTATCHS RNPMSLLSNG GNNPLLAATN GGGEAGGPSS PNLSVLSVQS ATIKEANSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4442221e-164DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625009.11e-179PREDICTED: uncharacterized protein LOC104092228
SwissprotQ9ZUG91e-91BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A1S3XWA31e-178A0A1S3XWA3_TOBAC; transcription factor bHLH66-like
STRINGXP_009596056.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-68LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]