PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00594g10015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 386aa MW: 43653.4 Da PI: 6.1968 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.7e-08 | 328 | 361 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Peinf101Scf00594g10015.1 328 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 361 469*****************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.6E-19 | 116 | 160 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.4E-17 | 118 | 159 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.4E-25 | 169 | 225 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-18 | 175 | 224 | IPR005541 | KNOX2 |
Pfam | PF03789 | 8.8E-7 | 282 | 303 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 282 | 303 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 282 | 302 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 302 | 365 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 304 | 369 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-16 | 304 | 368 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.78E-11 | 305 | 366 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 309 | 366 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 322 | 361 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MAFQDHFSQE MALQQHHQHQ QQQQNAAVLR SMLPDSPHDS RKSPQATWLL RQNNFLHLQT 60 SNSDSSTSNQ WLSPTAAATA AGGELSKISQ HSGDDHNNNE NTNEIEETGE KSWERQKCKA 120 DILNHPLYDQ LLSAHVSCLR IATPVDQLPR IDAQLAQSQN VVAKYSVLGQ GQPPLDDKDL 180 DQFMTHYVLL LSSFKEQLQQ HVRVHAMEAV MACWELEQSL QSLTGVAPGE GTGATMSDDD 240 DDQADSDTNF LDGGFDGPDS MGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE 300 EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK 360 RNWHSNPSTS TSQKSKRKSS AGEIKQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 3e-12 | 305 | 369 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ477689 | 0.0 | KJ477689.1 Solanum tuberosum class II knox protein (HOX1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256024.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | O22300 | 0.0 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | A0A1S4CVS9 | 0.0 | A0A1S4CVS9_TOBAC; homeobox protein knotted-1-like LET12 isoform X1 | ||||
TrEMBL | A0A1U7W6Z6 | 0.0 | A0A1U7W6Z6_NICSY; homeobox protein knotted-1-like LET12 isoform X1 | ||||
STRING | XP_009770424.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-155 | KNOTTED1-like homeobox gene 3 |