PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00590g23022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 386aa MW: 44133 Da PI: 7.0894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00590g23022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.2e-08	210	257	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peinf101Scf00590g23022.1 210 SHSLAERARREKIGKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 257 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-15	204	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.06E-6	204	261	No hit	No description
PROSITE profile	PS50888	14.665	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-16	206	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-6	210	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-9	212	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MLGRVQSSPD NHSDYNEEMS VLERQRAIFQ RLYESQQQIS SLSYQNLAQC NSLISEQIVN 60 GTQFQDFPVK IDPQMDQNSS FLNMFDREQR NWSSSDFTNN NSLELARQSF STVSNSSITT 120 TSRPLLKENV VSTKKRKAEV FCLFDLQFVE EGNCKTKKHE GEAGEVKSEI IVENEKVTST 180 NNLKENSTNS EVKKPDYIHV RARRGQATDS HSLAERARRE KIGKKMKCLQ DLVPGCNKVI 240 GKAGMLDEII NYVQSLQKQV EFLSMKLAAS NNTDSNLFAT YMANFPTMAA PSTLEIANIP 300 AFLQNNLIQQ QQGSRRKKFS IKVQECQISI IMDSFLRNLI LNPVAHAMLF HIFQMESTSF 360 EVSNYIREDL PSNLLYFILF FSYVLE

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MLGRVQSSPD NHSDYNEEMS VLERQRAIFQ RLYESQQQIS SLSYQNLAQC NSLISEQIVN  60
GTQFQDFPVK IDPQMDQNSS FLNMFDREQR NWSSSDFTNN NSLELARQSF STVSNSSITT  120
TSRPLLKENV VSTKKRKAEV FCLFDLQFVE EGNCKTKKHE GEAGEVKSEI IVENEKVTST  180
NNLKENSTNS EVKKPDYIHV RARRGQATDS HSLAERARRE KIGKKMKCLQ DLVPGCNKVI  240
GKAGMLDEII NYVQSLQKQV EFLSMKLAAS NNTDSNLFAT YMANFPTMAA PSTLEIANIP  300
AFLQNNLIQQ QQGSRRKKFS IKVQECQISI IMDSFLRNLI LNPVAHAMLF HIFQMESTSF  360
EVSNYIREDL PSNLLYFILF FSYVLE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	7e-57	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	7e-57	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253216.1	1e-128	PREDICTED: transcription factor BEE 2-like
TrEMBL	A0A1J6IHP1	1e-127	A0A1J6IHP1_NICAT; Transcription factor bee 2
STRING	XP_009803326.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4000	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.1	9e-48	BR enhanced expression 2