PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00588g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 21417.1 Da PI: 4.7979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 52 | 87 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 rg+WT++Ed +lv +v+++G ++W+ a+ g++++ Peinf101Scf00588g00019.1 52 RGPWTEQEDFQLVFYVNLFGDRRWDFLAKVSGLKLS 87 89*************************999986665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.307 | 47 | 80 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.67E-6 | 49 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-6 | 50 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-5 | 52 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00121 | 54 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MTNYPLQALH CNYSHYIYIT RVHDNCININ QSQVRELKTQ KRKMVQEEII RRGPWTEQED 60 FQLVFYVNLF GDRRWDFLAK VSGLKLSPAV DSIPITKQNK RNLETAEEKK IYNHDEAEEN 120 KNNMVYTMDE IWKNVESSEE AETVSKLPVM ASPIWDYCPD SLWMTDFNYF DNQDIPFFTG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013044 | 5e-31 | BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence. | |||
GenBank | HG975445 | 5e-31 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 5e-31 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798979.1 | 7e-32 | PREDICTED: transcription factor MYB48-like | ||||
TrEMBL | A0A1U7YIA7 | 2e-30 | A0A1U7YIA7_NICSY; transcription factor MYB48-like | ||||
STRING | XP_009798979.1 | 3e-31 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16190 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-16 | myb domain protein 48 |