PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00586g07020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 278aa    MW: 31273.6 Da    PI: 9.7103
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00586g07020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.8e-1154110155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  Peinf101Scf00586g07020.1  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEGAAAHAYDLAALKYWG 110
                               57*******************99998898888888*****5699***********98 PP
2AP238.92.1e-12133176955
                       AP2   9 dkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Peinf101Scf00586g07020.1 133 HHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 176
                               7789******99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-754110IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1454120IPR016177DNA-binding domain
SMARTSM003803.0E-1955124IPR001471AP2/ERF domain
PROSITE profilePS5103218.01755118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1255119IPR001471AP2/ERF domain
PRINTSPR003672.7E-65667IPR001471AP2/ERF domain
PROSITE profilePS5103214.697107184IPR001471AP2/ERF domain
SMARTSM003808.8E-19133190IPR001471AP2/ERF domain
PfamPF008472.0E-8133176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15133186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-14133185IPR001471AP2/ERF domain
CDDcd000188.85E-20134186No hitNo description
PRINTSPR003672.7E-6166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAKLSQQNQR NNSNNNNSTN SNANIITTTT GSSALKVKRT RKTVPRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEGAAAHA YDLAALKYWG SDTILNFPLS  120
TYEKEIIEMD GQHHHNGRWE ARIGRVFGNK YLYLGTYATQ EEAATAYDMA AIEYRGLNAV  180
TNFDLSRYIK WLKPNKNNTT NEPNVETNML PTPNHSIGSS STSTTMTSAS TGTPIYPHVQ  240
LTNMPDASLS QTRPPSATSA LGLLLQSTKY SFWRIIDE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793520.11e-147PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-76AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7Y4121e-146A0A1U7Y412_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009793520.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-66ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]