PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00571g08015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 388aa    MW: 44142.6 Da    PI: 5.3681
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00571g08015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.39.4e-37451372103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye+++d ++++++sw++ g+sfvv+d++ f++++LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F
  Peinf101Scf00571g08015.1  45 FLTKTYEMVDDTSTDHVVSWNRGGQSFVVWDPHAFSTSLLPKYFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAF 120
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+k+ll++i+r+k++
  Peinf101Scf00571g08015.1 121 LKGNKQLLRNIRRRKTS 137
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3941134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNMLYSVKEE YPGGSSSSAG GGEPPPPVMT PQPMEGLHDI GPPPFLTKTY EMVDDTSTDH  60
VVSWNRGGQS FVVWDPHAFS TSLLPKYFKH NNFSSFVRQL NTYGFRKIDP ERWEFANEAF  120
LKGNKQLLRN IRRRKTSNSQ LTPTEQALGP CVELGRFGFD GEVDRLRRDK QVLMMELVKL  180
RQQQQNTRAY LRSLELRVQG TERKQQQMMN FLARAMQNPE FVQQLIQQKE KRKQLEEAIT  240
KKRRRPIDQG PSTLGVGGSS HPIKSEPLEF RDPCGFQVSE LEALALEMQG FGRARMDHHD  300
ETTEGLEQFG NTDKELDEGF WEELFNDEGN EEVSSEVCKE ESRKAAIWIN QLIFGSSSAA  360
FVTSLILDSF LDPNAGLGYA DFGQVYGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-264313918125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230244KRKQLEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165188.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1J6JMM20.0A0A1J6JMM2_NICAT; Heat stress transcription factor a-6b
TrEMBLM1BPC10.0M1BPC1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-115heat shock transcription factor A6B