PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00543g06008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27332.3 Da PI: 8.9312 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.3e-12 | 59 | 105 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ K++Ka+ L +++ +k+L Peinf101Scf00543g06008.1 59 KSHSEAERRRRERINAHLATLRGLVPSS-----DKMDKAALLAEVICQVKQL 105 58*************************8.....7**********99999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.907 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-13 | 59 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 59 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-13 | 59 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-11 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.673 | 142 | 222 | IPR002912 | ACT domain |
CDD | cd04873 | 1.08E-6 | 144 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.0E-4 | 144 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNCKISRNLG GFCENEAKGS KGISQGLVLD TEKGELVKSC GRVDKKVGKS EGKSIAALKS 60 HSEAERRRRE RINAHLATLR GLVPSSDKMD KAALLAEVIC QVKQLKETAS HVSESLLIPL 120 DSDEIRVETI VENAGDGTSL FRASICCDYR PNLLSDLREV ISSIHVNLLK AEISTLGRRV 180 KNVFLFMNVI DARHVNTEAR EAFLTSVRQA FSSVLDYVSA LPEYSPKATY PNKRRCISCF 240 DSSSLSSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 69 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240939.1 | 1e-133 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-31 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1J6JRP8 | 1e-131 | A0A1J6JRP8_NICAT; Transcription factor bhlh30 | ||||
STRING | XP_009624214.1 | 1e-129 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6730 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 7e-34 | bHLH family protein |
Publications ? help Back to Top | |||
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