PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf00540g02017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 135aa MW: 15333.5 Da PI: 8.7271

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00540g02017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.6	2.1e-19	12	58	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk lrrkC++dC++ pyfp ++p++f +vh+++Ga+nv k+l+ Peinf101Scf00540g02017.1 12 RCAACKQLRRKCPSDCIFLPYFPPNNPQRFSYVHRIYGANNVGKMLQ 58 6********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.508	11	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-18	12	58	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
KKDLQTKMTS TRCAACKQLR RKCPSDCIFL PYFPPNNPQR FSYVHRIYGA NNVGKMLQDP 60 VYGSVGIITV LHQEIDHLQC QLAKVQAQID LLKAQTPVQG ELRQQIDFSA NLLADQNGIY 120 TSSPSSFDPS THWFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	6	93	5	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	6	93	5	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-46	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238658.1	3e-70	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59467	9e-31	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	8e-31	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1J6KI98	6e-69	A0A1J6KI98_NICAT; Lob domain-containing protein 24
STRING	XP_009589427.1	4e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-33	LOB domain-containing protein 24