PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00526g05016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 383aa MW: 43125.2 Da PI: 5.6024 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.3e-08 | 211 | 258 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peinf101Scf00526g05016.1 211 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 258 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-17 | 205 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.10E-10 | 205 | 262 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-17 | 207 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.25 | 207 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 211 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-9 | 213 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MDKTNLFLNK SNTMNHELNY FYNSNWENSM DHQNDPFESA LSSIVSSPVT SNVMPSTSNG 60 GDNFILKELI GKLGSICNSS EMSPHSYINS TTNSCYTTPL NSPPRLNLSI LDHQMNGNYV 120 AQEFKESEFL DSRENSTVSE QIPLGEVGIK YQNNVNSKKK KSSDEKNGSD NDFAEAAGDG 180 NKKQNKDNEK PAEPPKDYIH VRARRGQATD AHSLAERVRR EKIGERMKFL QDLVPGCNKV 240 TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT LDSRMDFNME SLVSKDLQMF QSVESLHHNM 300 HPSEISAQGF PYGLIQSQQG PNGHMARNVR MQLPYMDGFV EQTPKVPTFF EDDLHSITQM 360 GFGQIQPEIF PGNMSTAQMK VEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760399.1 | 0.0 | PREDICTED: transcription factor bHLH78-like | ||||
TrEMBL | A0A1U7VDK9 | 0.0 | A0A1U7VDK9_NICSY; transcription factor bHLH78-like | ||||
STRING | XP_009760399.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 3e-75 | bHLH family protein |