PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00522g03018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 1127aa MW: 126403 Da PI: 8.6541

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00522g03018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	3e-07	23	58	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++++ ++++a +++G++ Wk++a+ + Rt++++ Peinf101Scf00522g03018.1 23 EWSEDDLTRFYRAYRKYGKD-WKKVAAAVR-PRTAEMV 58 7***************99.******9.8999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.11E-8	20	67	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-4	20	68	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-6	23	58	IPR001005	SANT/Myb domain
CDD	cd00167	1.59E-5	23	58	No hit	No description
Pfam	PF06584	1.4E-32	602	702	IPR033471	DIRP domain
SMART	SM01135	7.4E-57	602	703	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MHFDGVLCSK LQKRKLSDML GPEWSEDDLT RFYRAYRKYG KDWKKVAAAV RPRTAEMVEA 60 LYTMNRAYLS LPEGTASVVG LIAMMTDHYC NLGASDSEQE SYEDGGTSRK PKKRARGKVQ 120 PNISKTSEMA SPTATHGCLT LLKKKRSGGS RPRAVGKRTP RFPVSFSYEN PKGDEYLSPT 180 RQGLKLQADD TDDDVKIALV LTEASQRGGS PQVSKTPNRR TSSAMSSPIE TAKRKRVNMD 240 MGNAKLLSSE VDEEEGSMEA DTGELFRYKN DLAETGTTGR TAQKGRRHSG KKWEVDDSGD 300 NHSDDIKEAC SGTEEGQRLG AVRGKLEMEA TDERKSRTSL QGPKKRSKKV LFRRDEGSAF 360 DALQTLADLS LMMPTAENED ESRIQVKDEV DESGSLEAVP ADKQRQKRGS AGVGSRWNQH 420 LSKFEVASGT ISKHGKVTCT DGVPETKQVR RAQKAMSSKA RKTEGHFNNS VIESLEAEAK 480 EASKKLTNKG KRSYQSVSPK IIKDQEHSSC ADPRSERSDS AQSTAQISVA NQVNLPTKVR 540 SRRKMDMKKP QRQENMEIPD KSLDDTSASV TARHDRAFSR KKKISNYLSN HQVRRWCTYE 600 WFYSAIDYPW FAKREFVEYL YHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLSEEKEK 660 LNQYRQSVRA HYTELREGIR EGLPTDLAKP LSVGQRVIAI HPKTREIHDG SVLTVDHSRC 720 RVQFDRPELG VEFVMDFDCM PLNPFENMPA LLTRHADAVD KFFESFNERK VNVRANEYLK 780 FQTGDIMENG DISSHFSPPS LPNSNLLKQA KVASAEADMQ SKSGVMETIT YQQTANSKPS 840 SVAQIQAKEA DVLALAELTR ALDKKDAVVS ELRRMNDDLL ESQKTNDCSL KDSEPFKKQY 900 AAVLIQLNEV NDQVSSALYR LRQRNTYQGS IPLAWPRPVP NFADPSGLST FDCYTSQPQE 960 SGFLVNEIIE SSKIKARTMV DAAMQVLSLS GRDNTTEKIE EAIDYAMLSF SGRDNTTEKI 1020 EEAIDYVNDR IPLDDSCMPT PPEPKSKNMS DRNEAEIPSE LITKCVATLL MIQKCTERQF 1080 PPADVAKVLD SSVASLQPCC SQNFPVYAEI QKCMGIIRNQ ILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MHFDGVLCSK LQKRKLSDML GPEWSEDDLT RFYRAYRKYG KDWKKVAAAV RPRTAEMVEA  60
LYTMNRAYLS LPEGTASVVG LIAMMTDHYC NLGASDSEQE SYEDGGTSRK PKKRARGKVQ  120
PNISKTSEMA SPTATHGCLT LLKKKRSGGS RPRAVGKRTP RFPVSFSYEN PKGDEYLSPT  180
RQGLKLQADD TDDDVKIALV LTEASQRGGS PQVSKTPNRR TSSAMSSPIE TAKRKRVNMD  240
MGNAKLLSSE VDEEEGSMEA DTGELFRYKN DLAETGTTGR TAQKGRRHSG KKWEVDDSGD  300
NHSDDIKEAC SGTEEGQRLG AVRGKLEMEA TDERKSRTSL QGPKKRSKKV LFRRDEGSAF  360
DALQTLADLS LMMPTAENED ESRIQVKDEV DESGSLEAVP ADKQRQKRGS AGVGSRWNQH  420
LSKFEVASGT ISKHGKVTCT DGVPETKQVR RAQKAMSSKA RKTEGHFNNS VIESLEAEAK  480
EASKKLTNKG KRSYQSVSPK IIKDQEHSSC ADPRSERSDS AQSTAQISVA NQVNLPTKVR  540
SRRKMDMKKP QRQENMEIPD KSLDDTSASV TARHDRAFSR KKKISNYLSN HQVRRWCTYE  600
WFYSAIDYPW FAKREFVEYL YHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLSEEKEK  660
LNQYRQSVRA HYTELREGIR EGLPTDLAKP LSVGQRVIAI HPKTREIHDG SVLTVDHSRC  720
RVQFDRPELG VEFVMDFDCM PLNPFENMPA LLTRHADAVD KFFESFNERK VNVRANEYLK  780
FQTGDIMENG DISSHFSPPS LPNSNLLKQA KVASAEADMQ SKSGVMETIT YQQTANSKPS  840
SVAQIQAKEA DVLALAELTR ALDKKDAVVS ELRRMNDDLL ESQKTNDCSL KDSEPFKKQY  900
AAVLIQLNEV NDQVSSALYR LRQRNTYQGS IPLAWPRPVP NFADPSGLST FDCYTSQPQE  960
SGFLVNEIIE SSKIKARTMV DAAMQVLSLS GRDNTTEKIE EAIDYAMLSF SGRDNTTEKI  1020
EEAIDYVNDR IPLDDSCMPT PPEPKSKNMS DRNEAEIPSE LITKCVATLL MIQKCTERQF  1080
PPADVAKVLD SSVASLQPCC SQNFPVYAEI QKCMGIIRNQ ILALIPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243718	1e-103	AC243718.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence.
GenBank	HG975440	1e-103	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-103	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595580.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009595581.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018624867.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3X518	0.0	A0A1S3X518_TOBAC; protein ALWAYS EARLY 3-like isoform X1
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]