PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00520g06005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 296aa    MW: 33383.3 Da    PI: 4.2135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00520g06005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.6e-192073356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              k+++++ eq+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Peinf101Scf00520g06005.1 20 KKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 73
                              56689************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-191477IPR009057Homeodomain-like
PROSITE profilePS5007117.3781575IPR001356Homeobox domain
SMARTSM003895.0E-181879IPR001356Homeobox domain
PfamPF000464.2E-162073IPR001356Homeobox domain
CDDcd000863.67E-172076No hitNo description
Gene3DG3DSA:1.10.10.604.3E-202283IPR009057Homeodomain-like
PRINTSPR000318.0E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000318.0E-65571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLEGLDEEGC VEESGHVSEK KRRLSVEQVK ALEKNFEVEN KLEPDRKVKL AQELGLQPRQ  60
VAVWFQNRRA RWKTKQLERD YNINELKSKV YVENGESRGV AVKEETMECE SDDKVIEQSK  120
HRDDINSNLV FGKCDEEEED DNDEDEEAEI NFEQSFKGGG MLNAAAAIAS TINFAHDFKD  180
GSSDSDNSSA ILNEDNSPNA AISSSGAFLI SNNECGSGVG SLSSLNLCFQ FTESTSSKSS  240
LGDAHKANNY YYQPQFVKME EHNFFNGEES CSTLFSDEQA PTLQWYCPED WNWKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1016102e-87AY101610.1 Nicotiana tabacum homeodomain protein Hfi22 (Hfi22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777009.11e-120PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_016502437.11e-120PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S4CMF71e-118A0A1S4CMF7_TOBAC; homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1U7WQP61e-118A0A1U7WQP6_NICSY; homeobox-leucine zipper protein ATHB-6-like
TrEMBLQ8L8F91e-119Q8L8F9_TOBAC; Homeodomain protein Hfi22 (Fragment)
STRINGXP_009777009.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-43homeobox protein 16