PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00519g01009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 388aa    MW: 42582.4 Da    PI: 9.0405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00519g01009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.2e-111944227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++G++C+F+H+p
  Peinf101Scf00519g01009.1 19 GEPDCSYYIRTGLCRFGSTCRFNHPP 44
                              6899********************97 PP
2zf-CCCH39.49.8e-136589327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              +++C+++++tGtCk+G++CkF+H++
  Peinf101Scf00519g01009.1 65 QPECQYYLKTGTCKFGATCKFHHPK 89
                              799********************96 PP
3zf-CCCH38.61.8e-12111135327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C +++rtG+Ck+G++CkF+H++
  Peinf101Scf00519g01009.1 111 ETECAYYMRTGQCKFGSTCKFHHPQ 135
                               578********************97 PP
4zf-CCCH38.12.6e-12248274127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C+f+++tG Ck+G+ C+F+H++
  Peinf101Scf00519g01009.1 248 PGQPECQFYMKTGDCKFGAVCRFHHPR 274
                               5789*********************96 PP
5zf-CCCH40.45e-13294320127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++lC f++r+G+Ck+G++CkF H++
  Peinf101Scf00519g01009.1 294 PGEPLCIFYSRYGICKFGPSCKFDHPM 320
                               589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4831745IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-51744IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-52245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-42343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.146290IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-66289IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-106589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-66691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-56888IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206108136IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6108136IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4114134IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596247275IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-9249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6251277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5253277IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037293321IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4298318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNLRSRESME SGHYPVREGE PDCSYYIRTG LCRFGSTCRF NHPPNRKLAI ATARMKGEYP  60
ERIGQPECQY YLKTGTCKFG ATCKFHHPKD KAGIAGRVTL NVMGYPLRPN ETECAYYMRT  120
GQCKFGSTCK FHHPQPSNMM VSLRGSPVYP PVPSATTPGQ LSYPLSRGSF IPGARWQGPS  180
SYTPLIVPQG VVSVPGFAYS GQLGSVSSPE GQQQTSGNGQ VYGTARSSDT ATMGYYALQR  240
ENVFPERPGQ PECQFYMKTG DCKFGAVCRF HHPRERLIPP PDCLLSPIGL PLRPGEPLCI  300
FYSRYGICKF GPSCKFDHPM TVFTYSVSAS SSAEAPTVQR LLGSSSGTSA LTLTSEGLVE  360
AVSTKPRRLS LSETRKMPPG DNNIDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235081.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1J6KXF70.0A0A1J6KXF7_NICAT; Zinc finger ccch domain-containing protein zfn-like protein
STRINGSolyc11g008900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-173zinc finger protein 1