PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Peinf101Scf00514g13008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 248aa MW: 28527.8 Da PI: 6.8701

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00514g13008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.1	2.3e-42	7	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratks 80 +pGfrF Pt+eelv++yL++k++g++ ++++vi+ vdiy+++Pw+Lp+ ++++++w+fF++ ++++a+g r++r t++ Peinf101Scf00514g13008.1 7 QPGFRFYPTEEELVNFYLRNKLDGRRdQHIQRVIPVVDIYHHNPWELPQmagegIREESSEQWFFFIPMQEREARGGRPTRLTTA 91 79********************996667778***********64555322235569******************* PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg v+s++++ +g k+t+vfy+grap+g+k+ W m+eyr+ Peinf101Scf00514g13008.1 92 GYWKATGCPGYVYSSNNRIIGGKRTMVFYTGRAPHGKKSLWKMNEYRA 139 ********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-46	3	169	IPR003441	NAC domain
PROSITE profile	PS51005	47.071	6	169	IPR003441	NAC domain
Pfam	PF02365	1.5E-20	8	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEMYDVQPGF RFYPTEEELV NFYLRNKLDG RRDQHIQRVI PVVDIYHHNP WELPQMAGEG 60 IREESSEQWF FFIPMQEREA RGGRPTRLTT AGYWKATGCP GYVYSSNNRI IGGKRTMVFY 120 TGRAPHGKKS LWKMNEYRAT SDGEASLTNN ISTNLKLRHE FSLCRVYKKS KCVRSFDRRP 180 TGFEGIPPQS ITGGDDQAAP SNQNLPSVES SSSGGEHHDG TSQPGESVDC LNLWENPVWE 240 WECLYFKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-30	1	169	15	168	NAC domain-containing protein 19
3swm_B	2e-30	1	169	15	168	NAC domain-containing protein 19
3swm_C	2e-30	1	169	15	168	NAC domain-containing protein 19
3swm_D	2e-30	1	169	15	168	NAC domain-containing protein 19
3swp_A	2e-30	1	169	15	168	NAC domain-containing protein 19
3swp_B	2e-30	1	169	15	168	NAC domain-containing protein 19
3swp_C	2e-30	1	169	15	168	NAC domain-containing protein 19
3swp_D	2e-30	1	169	15	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620854.1	1e-123	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-79	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U7YC31	1e-120	A0A1U7YC31_NICSY; NAC domain-containing protein 90-like
STRING	XP_009620854.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-76	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]