PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00506g14001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 28815.7 Da PI: 4.652 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.4 | 5.5e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Peinf101Scf00506g14001.1 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.1E-12 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.2E-18 | 1 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.35E-19 | 1 | 71 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLRR GAKTVNSLHL KHCVQSYNVF 60 DFLREVVSKV PDYGHSDAAG EMPKRRKVAI EEHHDSEDES KRSRMEMCAS PSGSSGRGRG 120 RGRGRGRGRG SRADRELSRP DMQLDSCTSV QQSGQQNPNP GTQVENNAEL KGSPKQDSSA 180 CERESSATTT LNLNANIDDT VDKSTAPEIA ACNSLSRPAD EKAEEGPQWS LEMERMVIDP 240 AHMSQLNSSL VEEEEDYDEE D |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 128 | RGRGRGRGRGR |
2 | 120 | 129 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780056.1 | 1e-142 | PREDICTED: dr1-associated corepressor-like | ||||
Refseq | XP_019247410.1 | 1e-142 | PREDICTED: dr1-associated corepressor-like isoform X2 | ||||
Refseq | XP_019247411.1 | 1e-142 | PREDICTED: dr1-associated corepressor-like isoform X3 | ||||
TrEMBL | A0A1J6IB46 | 1e-141 | A0A1J6IB46_NICAT; Uncharacterized protein | ||||
TrEMBL | A0A1U7WRX6 | 1e-141 | A0A1U7WRX6_NICSY; dr1-associated corepressor-like | ||||
STRING | XP_009780056.1 | 1e-141 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7960 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-51 | nuclear factor Y, subunit C11 |