PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00500g16021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 24257.6 Da PI: 4.4148 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.2e-09 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W++eEde+l+++++++G g+W+++++ Peinf101Scf00500g16021.1 14 KGLWSPEEDEKLYNYITKFGVGCWSSVPKLAA 45 678************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.95E-8 | 7 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.911 | 9 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 9 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-7 | 14 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.61E-6 | 17 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRHSSFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAASRQLT EASKDQLVSK 60 QVFDPLFLYE FQANVNPSGY SLRPYDHNQN QIEGNTNFGF FSMPSLTNFE QGHMTETDFS 120 ESSSSRMSLL YISEAKESSS NSSNMISHHN DAGIQMNEML ENSQALSWDV DNKIDSLFQY 180 PYDGIKNEED FNNPLSSLSE DLSGENLDVF HQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-34 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773279.1 | 1e-69 | PREDICTED: myb-related protein 330-like isoform X1 | ||||
Refseq | XP_009773281.1 | 1e-69 | PREDICTED: myb-related protein 330-like isoform X2 | ||||
Refseq | XP_016473081.1 | 1e-69 | PREDICTED: myb-related protein 330-like isoform X1 | ||||
TrEMBL | A0A1S4A924 | 2e-68 | A0A1S4A924_TOBAC; myb-related protein 330-like isoform X1 | ||||
TrEMBL | A0A1U7W7V3 | 2e-68 | A0A1U7W7V3_NICSY; myb-related protein 330-like isoform X2 | ||||
TrEMBL | A0A1U7WF53 | 2e-68 | A0A1U7WF53_NICSY; myb-related protein 330-like isoform X1 | ||||
STRING | XP_009773279.1 | 4e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18771 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-20 | myb domain protein 86 |