PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00500g05005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 470aa MW: 53116.6 Da PI: 8.6454 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 92 | 111 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H++ Peinf101Scf00500g05005.1 92 VCKECGKRFQSWKALFGHMK 111 6******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-6 | 8 | 32 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.057 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 9 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.67E-9 | 9 | 31 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.67E-9 | 86 | 113 | No hit | No description |
SMART | SM00355 | 0.012 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 91 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.8E-8 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.09 | 317 | 339 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.4E-7 | 317 | 339 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 317 | 344 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.8E-11 | 317 | 341 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 319 | 339 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.4E-7 | 379 | 406 | No hit | No description |
SMART | SM00355 | 0.29 | 384 | 406 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 384 | 406 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-9 | 384 | 407 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 386 | 406 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MKQDQELRHV CKFCNKSFPC GRSLGGHMRT HLINISAFDD HKNEKYTKKK LPSIEATSSK 60 FADYGLRENH KKTSKFVESS EEDTLLQNQN KVCKECGKRF QSWKALFGHM KCHSDKIVSS 120 MNSTVDEESW NNDANYAIHK QVILDSQSDN ETAVPNRKKR SSRKLKRYMT STTTSSNITV 180 VNVSPCLSEI EQEQEEVAMS LIILSRDVGN WIGLNPYTEF SGSSQPHQTE DGVLVKLKKV 240 QNEKPEQGET SKSNVKACGV PRNGHKMENS FVQAKETKVE ESTKKRNFEL TEGDFSVTSN 300 TKKLNDHASD SEKKLKFQCT TCNKSFHSYQ ALGGHSTSHR KTKDLQNQAT DSKIIKNSSK 360 NNSTIDEFGE KDESFSVSKK LKGYECPLCF KIFQSGQALG GHKRSHLIAE AKSNNQVVMI 420 EKPIPEIRDF LDLNLPAPVE EESTSEHVGF QPWWIGSSHK HEQLVGLISN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006606 | 0.0 | AB006606.1 Petunia x hybrida mRNA for ZPT4-4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515360.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like isoform X1 | ||||
TrEMBL | O22091 | 0.0 | O22091_PETHY; ZPT4-4 | ||||
STRING | XP_009801846.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4481 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 3e-26 | C2H2-like zinc finger protein |