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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peinf101Scf00500g03031.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family |
MIKC_MADS |
Protein Properties |
Length: 230aa MW: 26570.5 Da PI: 9.9799 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peinf101Scf00500g03031.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.7 | 8.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++
Peinf101Scf00500g03031.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59
79***********************************************86 PP
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2 | K-box | 108.7 | 6.7e-36 | 79 | 172 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89
+ + ++++ sl+ e+akLk++ie Lqr+qRh++GedL+sLs+keLq+LeqqL++slk+iRs+Kn+l++e+i+elqkk k+lqe
Peinf101Scf00500g03031.1 79 QLVPTDHSSPGSLNLEHAKLKARIEVLQRNQRHYMGEDLDSLSMKELQNLEQQLDSSLKHIRSRKNQLMHESISELQKKDKSLQE 163
555566677788999********************************************************************** PP
K-box 90 enkaLrkkl 98
+n+ L kk+
Peinf101Scf00500g03031.1 164 QNNLLAKKV 172
*****9996 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.212 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.27E-42 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.586 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.3E-30 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MGRGRVQMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD 60 SCMERILERY ERYSYADRQL VPTDHSSPGS LNLEHAKLKA RIEVLQRNQR HYMGEDLDSL 120 SMKELQNLEQ QLDSSLKHIR SRKNQLMHES ISELQKKDKS LQEQNNLLAK KVLIILIARI 180 ESTSHCKTLQ LRVPMKEAYQ STVDNGEVEG ASQQQPANTM PPWMLRHLNG
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF176782 | 0.0 | AF176782.1 Petunia x hybrida MADS box transcription factor (PFG) mRNA, complete cds. |