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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00500g03006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 523aa MW: 57872.3 Da PI: 8.192 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.4 | 1.5e-41 | 165 | 240 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls+ k yh+rhkvCevhsk+++v+v+g++qrfCqqCsrfh l +fD++krsCr+rLa+hnerrrk++ Peinf101Scf00500g03006.1 165 CQVQGCGKDLSSSKVYHKRHKVCEVHSKTAKVIVNGIQQRFCQQCSRFHLLGDFDDGKRSCRKRLAGHNERRRKPH 240 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-33 | 160 | 226 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.137 | 162 | 239 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-38 | 163 | 242 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-31 | 165 | 238 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MESWSFVSGG RGFVSEESVS LDNGIVRGRN GVISWEVNTL CSFGSTVINS SQEVIGNQES 60 PELDTPNNHI RDDLTNKFGD GRVFSSVTAP HSAFSMESES SSKLSRSVVE SNCRDPSVID 120 LELGRFADLK DEQSLISSKI MTNLTSRVPA KRMRAGGLNY QTPFCQVQGC GKDLSSSKVY 180 HKRHKVCEVH SKTAKVIVNG IQQRFCQQCS RFHLLGDFDD GKRSCRKRLA GHNERRRKPH 240 TGSAGTRFRA NSFAMPSSLC QNVLGSSLLH QSKYEMDWYK NVKVEDTADY SPIANGNSQP 300 KSHFASYHAE KQCPPLHDEG IMSFTRSKID ESSKSYLHDM GRSDFVTRSM FQSTSIGGDV 360 LHVLDSSSTI QGLSGISNSS SAHSLLSSQS QDSSNHSSLI PTAHHLITPS SNARYNATHI 420 SEKLLGDGQQ TLSTRVIDTF NSTAVNSAET SLEQILVSNS SNDCSINRII QGSEYINTKD 480 YLPCEDGLTI DLLQLSSQLQ RVEHQRRFMQ VKHINARNTR ANR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 164 | 238 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313103.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_009777325.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_009777331.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A2K9ZXH6 | 0.0 | A0A2K9ZXH6_PETHY; Squamosa promoter binding-like protein 6c | ||||
STRING | XP_009777325.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 9e-47 | SBP family protein |