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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00497g06019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 556aa MW: 60950.5 Da PI: 4.8047 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 391.5 | 9.3e-120 | 197 | 553 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv++L++cAea+++++++la+alL+++ la +++ +m+++a+yf+eALa++++r l p++ ++ s+ + + f+ Peinf101Scf00497g06019.1 197 LVHTLMACAEAIQQDNFKLAEALLKQIGFLAVSQAGAMRKVATYFAEALARKIYR--------LYPTNPND--SAFTDLLQMHFY 271 689****************************************************........44555543..4444444446** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e++P+lkf+h+taNqaIlea+ g+++vH+iDf+++qG+QWpaLlqaLa Rp+g+p++R+Tg+g+p++++++ l+e+g++La++A+ Peinf101Scf00497g06019.1 272 ETCPYLKFAHFTANQAILEAFTGKSKVHVIDFSMKQGMQWPALLQALALRPGGAPTFRLTGIGPPAHDNTDHLQEVGWKLAQLAD 356 ************************************************************************************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++v+fef+ +va++++dl+ ++++++gE++aVn++++lh ll++++ +e+ vL++vk+++P++++vveqea+hn++ F + Peinf101Scf00497g06019.1 357 SINVEFEFRGFVANSIADLNATMFDIREGETVAVNSIFELHPLLARPGGVEK----VLSFVKDMKPEIFTVVEQEANHNGPGFID 437 ***************************************************9....***************************** PP GRAS 256 rflealeyysalfdsleak.............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 rf+e+l+yys+lfdsle l++ s++++++++++lgr+i nv Wr r+++ GF+pv Peinf101Scf00497g06019.1 438 RFTESLHYYSTLFDSLEGCgaggggaggvggeLGPVSDQDKMMSEVYLGRQILNV-----------------WRTRFNSGGFEPV 505 ****************988899**********9999****************997.................************* PP GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l+++a kqa++ll+ ++ + gyrvee++g+l+lgW++rpL+++SaW+ Peinf101Scf00497g06019.1 506 HLGSNAFKQASMLLALFAgGGGYRVEENNGCLMLGWHTRPLIATSAWK 553 ******************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 6.6E-34 | 42 | 108 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 1.2E-33 | 42 | 115 | No hit | No description |
PROSITE profile | PS50985 | 57.927 | 171 | 532 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-117 | 197 | 553 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MKRNQNQTTS YQQQEQENNN SSSSNTGKAK MWEQEQQDAG VDELLAVLGY KVKASDMAEV 60 ASKLEQLEQV MGSVQQDNLS FLASETVHYN PSDLSSWLES MISEFNPHDP FTPNTNDKTN 120 IVYDDSSFDS DLTAIPGKAL LSQVEPESKR FKMEISSSSS SLSVDSTMWG SAGTPLPEST 180 ATRPVVLVDS QDNGVRLVHT LMACAEAIQQ DNFKLAEALL KQIGFLAVSQ AGAMRKVATY 240 FAEALARKIY RLYPTNPNDS AFTDLLQMHF YETCPYLKFA HFTANQAILE AFTGKSKVHV 300 IDFSMKQGMQ WPALLQALAL RPGGAPTFRL TGIGPPAHDN TDHLQEVGWK LAQLADSINV 360 EFEFRGFVAN SIADLNATMF DIREGETVAV NSIFELHPLL ARPGGVEKVL SFVKDMKPEI 420 FTVVEQEANH NGPGFIDRFT ESLHYYSTLF DSLEGCGAGG GGAGGVGGEL GPVSDQDKMM 480 SEVYLGRQIL NVWRTRFNSG GFEPVHLGSN AFKQASMLLA LFAGGGGYRV EENNGCLMLG 540 WHTRPLIATS AWKLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-61 | 204 | 552 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-61 | 204 | 552 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-61 | 204 | 552 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789076.1 | 0.0 | PREDICTED: DELLA protein GAI1-like | ||||
Refseq | XP_016452673.1 | 0.0 | PREDICTED: DELLA protein GAI1-like | ||||
Swissprot | Q8S4W7 | 0.0 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A1S3YKV3 | 0.0 | A0A1S3YKV3_TOBAC; DELLA protein GAI1-like | ||||
TrEMBL | A0A1U7XHE4 | 0.0 | A0A1U7XHE4_NICSY; DELLA protein GAI1-like | ||||
STRING | XP_009789076.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |