PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Peinf101Scf00482g04027.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 242aa MW: 27229.9 Da PI: 9.3342

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00482g04027.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Peinf101Scf00482g04027.1 156 SHSLAERVRRERISERMKVLQTLVPGC----DKVTGKALMLDEIINYVQSLQ 203 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.08E-10	150	207	No hit	No description
SuperFamily	SSF47459	1.31E-17	150	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.688	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-17	152	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-7	156	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-10	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MAAFQYQLHH LNSFHVDSVF IQGSNNIKMS GLLEEPNNTS TSTIVPNCIN SKSYQPESFI 60 LEMDSSSVID KREGVAQVNS MDRKRKSSEG SSNSMSSSQS KNVREGDHGK MQKKRNGHVI 120 TKEKKAKKDE KKLANDQEAP TGYIHVRARR GQATDSHSLA ERVRRERISE RMKVLQTLVP 180 GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASLNPMY YDFGMELDTL MVRPDQGLVA 240 VC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE653924	1e-94	HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311839.1	3e-91	transcription factor bHLH137-like
Refseq	XP_015164223.1	1e-91	PREDICTED: transcription factor bHLH137, partial
Swissprot	Q93W88	5e-53	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A8TLW5	8e-90	A8TLW5_CAPAN; BHLH transcription factor Upa20
TrEMBL	M1CKP3	6e-90	M1CKP3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400069568	9e-91	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4116	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]