PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00475g19014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 22242.9 Da PI: 8.9535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.9 | 6.4e-07 | 106 | 142 | 9 | 50 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 r RR++i +++ L++l+P +K++ a++L +A++Y Peinf101Scf00475g19014.1 106 ARHRREKISERIRILQRLVPGG-----TKMDTASMLDEAIHY 142 699*****************87.....8************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.598 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-9 | 98 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-7 | 99 | 151 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-10 | 101 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-9 | 103 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-4 | 107 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDLYEITQFM SNVEMTQLLP VDNSYVMTNS PSLSLLTNSI EEPIMPHLLS IQEKTLDNEK 60 HNSMDAMREM IFRMSMMQPI HIDPESVKPP KRKNVKISKD PQSVAARHRR EKISERIRIL 120 QRLVPGGTKM DTASMLDEAI HYKQLKYLEQ AAAVNNRPMV TGFSTKLLAA PMDYSNSVGS 180 CQYPPLMNSK VQMLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798816.1 | 7e-98 | PREDICTED: transcription factor HEC2-like | ||||
Swissprot | Q9SND4 | 5e-41 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | A0A1U7YA47 | 2e-96 | A0A1U7YA47_NICSY; transcription factor HEC2-like | ||||
STRING | XP_009798816.1 | 3e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 3e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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