PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00474g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 262aa    MW: 27976.7 Da    PI: 8.569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00474g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-086085227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              kt+lC+ +     C++Gd+C+FaHg+
  Peinf101Scf00474g00001.1 60 KTRLCSKYNSPEGCRFGDKCHFAHGE 85
                              8***********************96 PP
2zf-CCCH34.53.5e-11224247226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               kt++C +fa+ G C +G++C+FaHg
  Peinf101Scf00474g00001.1 224 KTKICENFAK-GSCTFGEKCHFAHG 247
                               89********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.174121IPR000571Zinc finger, CCCH-type
PfamPF146082.6818No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-135688IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-85789IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5075886IPR000571Zinc finger, CCCH-type
SMARTSM003560.0135885IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-66085IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.45E-15121200IPR004088K Homology domain, type 1
SMARTSM003221.0E-10128198IPR004087K Homology domain
PROSITE profilePS5008414.299129193IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.6E-15129198IPR004088K Homology domain, type 1
CDDcd001056.14E-14131193No hitNo description
PfamPF000131.7E-10131195IPR004088K Homology domain, type 1
SuperFamilySSF902291.7E-8221252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13221252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.098222249IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6222248IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8224247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRGCTSGCPF GEGCHFLHYV PGGLKAVTQM LGSNPALPAA SRNSAAPPSF PDGSSPPAVK  60
TRLCSKYNSP EGCRFGDKCH FAHGEWELGK RTAPLHEESH GMFQMHGMYG NRPETTPAGF  120
GAAASFGSSA TAKISVDASL AGPIIGKGGV NSKQICHMTG AKLSIRDHES DPNLKNIELE  180
GTIDQIEQAS RMVRELILSV RTAAAPQMRN PGSRPTSNYK TKIKTKICEN FAKGSCTFGE  240
KCHFAHGAEE LREFGANKPQ ID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356452.11e-150PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-88C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4A4V51e-148A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7YM221e-148A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009803026.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-52C3H family protein