PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00471g14032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | DBB | ||||||||
Protein Properties | Length: 297aa MW: 32806.1 Da PI: 8.6776 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28 | 4.6e-09 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++ke++lfC+ ++ lCedC H+ H Peinf101Scf00471g14032.1 4 QCDVCNKKEASLFCTADEAALCEDCDHRVHHVnklagkH 42 7*************************9996323555555 PP | |||||||
2 | zf-B_box | 25.2 | 3.5e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e + lfC++++ lC++C +++Hk Ht Peinf101Scf00471g14032.1 54 QIPLCDICQERKGFLFCQQDRAILCRECDVSIHKAneHT 92 6689******99*********************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.007 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.98E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 9.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-7 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.4E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.096 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 55 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.59E-10 | 56 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MKIQCDVCNK KEASLFCTAD EAALCEDCDH RVHHVNKLAG KHQRFSLLQP SPKQIPLCDI 60 CQERKGFLFC QQDRAILCRE CDVSIHKANE HTQKHNRYLL TGIKLSANCV LYSSTPSQSS 120 ASSASSLTNT HNSAPSFKSQ NPTSKPENVS VSSSISTTIS TSPKDKVAGC NGQLMNIVGN 180 GLTSSISEYL QMLPGWHVED FLDSTTPHGL SKNQLSSFPK ENIGLWVPQA PPPMQSKQQI 240 QTQYFPPSNL NFGGQIGLKE SKEVISNKSS RKWRDDNSFA VPQISPPSTT FKRPRTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612483.1 | 1e-154 | PREDICTED: B-box zinc finger protein 21-like isoform X1 | ||||
Refseq | XP_016514113.1 | 1e-154 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 2e-76 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S4DL46 | 1e-153 | A0A1S4DL46_TOBAC; B-box zinc finger protein 21-like | ||||
STRING | XP_009612483.1 | 1e-153 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-75 | salt tolerance homolog2 |