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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00471g14006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9346.44 Da PI: 8.4396 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 3 | 47 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++ +a +++ ++ +W Iar++g g++++++k ++ Peinf101Scf00471g14006.1 3 SWTAKQNKKFEEALALYDKDtpdRWYNIARCVG-GKSAEEVKRHYE 47 6********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.756 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 3 | 47 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.47E-13 | 3 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-7 | 3 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 3 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MASWTAKQNK KFEEALALYD KDTPDRWYNI ARCVGGKSAE EVKRHYELLV KDIVQIENDQ 60 VPLPNYRAAG SNGRGYTNEQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-30 | 4 | 81 | 11 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611761.1 | 4e-50 | PREDICTED: protein RADIALIS-like 5 | ||||
Refseq | XP_016447037.1 | 4e-50 | PREDICTED: protein RADIALIS-like 5 | ||||
Swissprot | F4JVB8 | 2e-33 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1S3Y571 | 9e-49 | A0A1S3Y571_TOBAC; protein RADIALIS-like 5 | ||||
STRING | XP_009611761.1 | 1e-49 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-36 | RAD-like 1 |
Publications ? help Back to Top | |||
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