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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00471g13042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 50697.4 Da PI: 7.4478 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.7e-06 | 420 | 442 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G +C + H+ Peinf101Scf00471g13042.1 420 KPCIYFNTSRGCRNGVNCVYLHD 442 69********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.451 | 416 | 444 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 420 | 444 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MKVRLFLSED SPSQVGLGAQ DHLQAKISWP LHAGLPVSDD NLPPGFEATQ PESLWKNKLA 60 QIPVIKWTRP PSFVLDIKWR VVAGEESNEM EIQKQREMRM LEAIYPRESA IPPNPSMVPG 120 EERLHNEQHP PIIPITPIEE EEVPDPSFGS MLPSNAVSSK AQVVQSGVPL SNRSLGNNLP 180 VHGISVPGVV PGMAPDVVAA AQAALTALMA DNSQGNLIDH ELLIKILSDP KIVDQLVTQQ 240 GVGTSSHSMP ATSTQSVSSA HNMPNQRPQA SSVTPRPLAA VSRADPSYVH SGRTDPLPVQ 300 VSRTELAMPS VAGASNGPFH SAPSRIGPIP SLRPRVPEVV SAPLQSVGAP VATASTPSSS 360 VPAPVARDMN YYKSLIQQHG GERQETVPQY SNNRNNQHLG SMQESVNSSN IRDSKPKIMK 420 PCIYFNTSRG CRNGVNCVYL HDASSQQRVG SLPDVQSSKR MKMDREITGT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595509.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 6 isoform X1 | ||||
TrEMBL | A0A1S4A2E4 | 0.0 | A0A1S4A2E4_TOBAC; zinc finger CCCH domain-containing protein 6-like isoform X1 | ||||
STRING | XP_009595509.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5147 | 7 | 9 |