PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00468g01019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 35552.2 Da PI: 6.3166 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 7.1e-10 | 236 | 279 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Peinf101Scf00468g01019.1 236 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 279 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-12 | 229 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.167 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-11 | 231 | 283 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-13 | 231 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-12 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-7 | 237 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MSMALAKEHV TNPTMGLQVD SYEYYEGEFG VLHASHDDHS SPELFPINED GENSDKTSPT 60 KAKNFAISSS SSLSSPSSSN SNGHSVITFK GGYGNFMHAG GSLLSFEQSE RFCPNPRMSS 120 NNQVECSVWE DNNLQYNNNF QNSLTPKGSS NTSPRVIENS KNIQQENSYG STSNGIPFGW 180 LNSEANASTT THVHQDTERN DLMQEESMQT TKKQCTAASK KAKPNNSIAT KDPQSIAAKN 240 RRERISERLK ILQELVPNGS KVDLVTMLEK AISYVKFLQL QVKVLATDEF WPAQGGKAPD 300 ISQVKEAIDA ILATQRDRNS SSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599823.1 | 1e-168 | PREDICTED: transcription factor bHLH83-like | ||||
Refseq | XP_016461897.1 | 1e-168 | PREDICTED: transcription factor bHLH83-like | ||||
Swissprot | Q9C707 | 6e-57 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A1S3ZCD9 | 1e-167 | A0A1S3ZCD9_TOBAC; transcription factor bHLH83-like | ||||
STRING | XP_009599823.1 | 1e-167 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9986 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-58 | ROOT HAIR DEFECTIVE6 |