PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00443g06004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

BBR-BPC

Protein Properties

Length: 342aa MW: 38387.5 Da PI: 9.5692

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00443g06004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	379.4	6.1e-116	10	342	1	301
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 md+ g+re r+k+ + + ++ +s+ +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erd Peinf101Scf00443g06004.1 10 MDNGGHREngRHKPpQGQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERD 89 999999877888773222222223444.....4************************************************** PP GAGA_bind 79 nkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeekle.alpieeaaeeakekkkkkkrqra 156 n++++l ++e s++ s +p+g+q+ +g k++++ qq +++ +le+++++l++ +++e + p++ aa+e ++ +++k++++a Peinf101Scf00443g06004.1 90 NAIATLHYRESSMNsedmSPCPPGCQIARGEKHMHHPQQhVHHqLHLEEPTFNLSDLHMNEsSSPLSPAAPEPTKPRRNKRTKEA 174 ********99999889***************5344578899999999988776146777777777666666655555 PP GAGA_bind 157 kkpkekkak.kkkkksekskkkvkkesader.......................skaekksidlvlngvslDestlPvPvCsCtG 217 k+ ++k++ k+ kk +k+ ++ +k d + sk ++k++dl+ln+v +Dest+PvPvCsCtG Peinf101Scf00443g06004.1 175 KSVTSSKKTsKPSKKVKKEAEDLSKTMLD-KsqewngtqemgggsdvfnrqlsvSKPDWKDQDLGLNQVPFDESTMPVPVCSCTG 258 44333333224444444444444444433.1467999******************************************** PP GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++r CYkWGnGGWqS+CCtt++S+yPLP+ +++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+ Peinf101Scf00443g06004.1 259 VSRACYKWGNGGWQSSCCTTNLSMYPLPTLPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 342 *********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.8E-101	10	342	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.2E-164	10	342	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MTVVHRVYHM DNGGHRENGR HKPPQGQWLM QHQPSMKQIM AIMAERDAAI QERNLALSEK 60 KAALAERDMA ILQRDSAIAE RNNAIMERDN AIATLHYRES SMNSEDMSPC PPGCQIARGE 120 KHMHHPQQHV HHQLHLEEPT FNLSDLHMNE SSSPLSPAAP EPTKPRRNKR TKEAKSVTSS 180 KKTSKPSKKV KKEAEDLSKT MLDKSQEWNG TQEMGGGSDV FNRQLSVSKP DWKDQDLGLN 240 QVPFDESTMP VPVCSCTGVS RACYKWGNGG WQSSCCTTNL SMYPLPTLPN KRHARIGGRK 300 MSGSAFTKLL SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MTVVHRVYHM DNGGHRENGR HKPPQGQWLM QHQPSMKQIM AIMAERDAAI QERNLALSEK  60
KAALAERDMA ILQRDSAIAE RNNAIMERDN AIATLHYRES SMNSEDMSPC PPGCQIARGE  120
KHMHHPQQHV HHQLHLEEPT FNLSDLHMNE SSSPLSPAAP EPTKPRRNKR TKEAKSVTSS  180
KKTSKPSKKV KKEAEDLSKT MLDKSQEWNG TQEMGGGSDV FNRQLSVSKP DWKDQDLGLN  240
QVPFDESTMP VPVCSCTGVS RACYKWGNGG WQSSCCTTNL SMYPLPTLPN KRHARIGGRK  300
MSGSAFTKLL SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982302	0.0	FJ982302.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803495.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803496.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803498.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803499.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803500.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803501.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803502.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803503.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803504.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803505.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803506.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803507.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-141	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A1U7YND6	0.0	A0A1U7YND6_NICSY; protein BASIC PENTACYSTEINE6-like
STRING	XP_009803495.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5353	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-124	basic pentacysteine 6