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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Peinf101Scf00443g06004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 342aa MW: 38387.5 Da PI: 9.5692 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf00443g06004.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 379.4 | 6.1e-116 | 10 | 342 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78
md+ g+re r+k+ + + ++ +s+ +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erd
Peinf101Scf00443g06004.1 10 MDNGGHREngRHKPpQGQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERD 89
999999877888773222222223444.....4**************************************************** PP
GAGA_bind 79 nkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeekle.alpieeaaeeakekkkkkkrqra 156
n++++l ++e s++ s +p+g+q+ +g k++++ qq +++ +le+++++l++ +++e + p++ aa+e ++ +++k++++a
Peinf101Scf00443g06004.1 90 NAIATLHYRESSMNsedmSPCPPGCQIARGEKHMHHPQQhVHHqLHLEEPTFNLSDLHMNEsSSPLSPAAPEPTKPRRNKRTKEA 174
************99999889*******************5344578899999999988776146777777777666666655555 PP
GAGA_bind 157 kkpkekkak.kkkkksekskkkvkkesader.......................skaekksidlvlngvslDestlPvPvCsCtG 217
k+ ++k++ k+ kk +k+ ++ +k d + sk ++k++dl+ln+v +Dest+PvPvCsCtG
Peinf101Scf00443g06004.1 175 KSVTSSKKTsKPSKKVKKEAEDLSKTMLD-KsqewngtqemgggsdvfnrqlsvSKPDWKDQDLGLNQVPFDESTMPVPVCSCTG 258
44333333224444444444444444433.1467999************************************************ PP
GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++r CYkWGnGGWqS+CCtt++S+yPLP+ +++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
Peinf101Scf00443g06004.1 259 VSRACYKWGNGGWQSSCCTTNLSMYPLPTLPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 342
***********************************************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MTVVHRVYHM DNGGHRENGR HKPPQGQWLM QHQPSMKQIM AIMAERDAAI QERNLALSEK 60
KAALAERDMA ILQRDSAIAE RNNAIMERDN AIATLHYRES SMNSEDMSPC PPGCQIARGE 120
KHMHHPQQHV HHQLHLEEPT FNLSDLHMNE SSSPLSPAAP EPTKPRRNKR TKEAKSVTSS 180
KKTSKPSKKV KKEAEDLSKT MLDKSQEWNG TQEMGGGSDV FNRQLSVSKP DWKDQDLGLN 240
QVPFDESTMP VPVCSCTGVS RACYKWGNGG WQSSCCTTNL SMYPLPTLPN KRHARIGGRK 300
MSGSAFTKLL SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982302 | 0.0 | FJ982302.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. |
