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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00441g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TCP | ||||||||
Protein Properties | Length: 383aa MW: 44218.1 Da PI: 6.9611 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.8 | 3.3e-41 | 118 | 249 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ +++ aikel + s+ +++c+++ss+ ++ ++s Peinf101Scf00441g01003.1 118 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKELLANISQENNSCNSNSSNDQGRKES 202 79**************************************************************999999995555555555333 PP TCP 87 sgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 + + + + ++++++ + + ++nl k ++ a++ e+++ekm+ik ++ Peinf101Scf00441g01003.1 203 K-FEVPLSLEKSNNEVKVKDHRNLRKMESIGAKEM--ESNKEKMMIKRHK 249 3.344444466666666667888888777666666..8999999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-38 | 118 | 252 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.564 | 120 | 178 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MFPKSNINDL FPYNEDELLK QSFTYDYHQN PNSTSRVELD HPFFSHFPSP FLDVQEYPLS 60 QIFSQELDAS HDHDIEADLD ISRSMEDQSL NPGKKIPPEP SSPSSKKRKL SAKPRRRTGK 120 KDRHSKICTA QGVRDRRMRL SLQIARKFFD LQDMLGFDKA SKTIEWLFSK SNNAIKELLA 180 NISQENNSCN SNSSNDQGRK ESKFEVPLSL EKSNNEVKVK DHRNLRKMES IGAKEMESNK 240 EKMMIKRHKK GKELYESTNP NNIESNIFCN KDTTQEKSTS PHEANSQTLE HQFANVGIME 300 SYLGGTSSSL TSIFDNHENN IEVRGRDNYD NCFMSYLENW DIKNTSSSSY RSTTMTNEIQ 360 MPFAGNLSSI YLDNSRFQFQ HLD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 116 | KRKLSAKPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR002104 | 0.0 | KR002104.1 Petunia x hybrida TCP transcription factor 2 (TCP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016450579.1 | 1e-138 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A0H4UQT6 | 0.0 | A0A0H4UQT6_PETHY; TCP transcription factor 2 | ||||
STRING | XP_009601065.1 | 1e-138 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-30 | TCP domain protein 12 |