PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00437g14022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 968aa MW: 107475 Da PI: 7.6389 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.6 | 9.9e-40 | 141 | 218 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Peinf101Scf00437g14022.1 141 CCQVQDCQVDLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 218 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-31 | 135 | 203 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 139 | 216 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-37 | 140 | 221 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.1E-29 | 142 | 215 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.3E-7 | 240 | 265 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.22E-7 | 746 | 854 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.43E-7 | 748 | 855 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.3E-7 | 748 | 857 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 968 aa Download sequence Send to blast |
MEAHNCNGKK SMEWDLNDWK WDGDLFRATP LNSLPLDCRS KEFLPIGSKI QETSRILNLN 60 SLSSGSDEMI LLGNDKGRKE LEKRRRGAVI IDENDEVESL NLKLGEQIYP MMEGEVEKWE 120 EKSGKKKKIG SGNSSNSRVV CCQVQDCQVD LSNAKDYHRR HKVCDVHSKA AKALVGNVMQ 180 RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN KRRRKTHPEN VANGASTNDE RGTNSSDQTK 240 DQDLLSHLLR NLASGAAANN ERNTPALLPA PPDVHNTGTS MGAPKEDYPR PNGDCLIIPA 300 SEMTEKRTGT SDAERGISQN LCASQPDFLY RRKESLPICA NASATTSASV KLIDLNNIYD 360 DSQDGNEKLL NSSSANPGAA SSSCPLWIYH DPHKSSPPSI SGNPRSTPSL STSTSSGEAQ 420 SRTDRIVFKL FGKDPSDFPT ALRKQILDWL SNSPTDIESY IRPGCIILTL YLQMDKSIWK 480 ELYCDLNSSL RKLLNASADS FWQTGWIYTR VNDRVAFLFN GQVVLDTPLP VKSHWSCGIS 540 IVKPIAVCAS ERVQFLVKGF NLSRPTTRLL CALEGQYLVQ GNCTDMMLGA DSCMDHEEIQ 600 SLSFPCLMPN VIGRGFIEVE DHGLSSNFFP FIVAEKDVCS EIRTLESIIE VAETAGGFLG 660 GTEELQARDQ ALDFLHEAGW LLHRISRVGS DANLNLFPFQ RFKWLIQFSI DHDWCAVVKK 720 LLDVLSNGII DVGQQSSLDV ALREVGILHQ AVRRKCRSMV EVLLRYRAHG AFDKSGLQKQ 780 QGGDSYLFRP DEVGPGGLTP LHVVASLSGF ENILDALIDD PGQVGIEVWK SARDSTGLTP 840 NDYACLRGHY SYIHMVQKKI KEKPGDGHVV LNIPGSLLDN SLKKKLSDGH RSVKVASLQT 900 EKSQCRQCKQ KLSYGNSGSS VALYKPAMLS MVAIAAICVC VALLFKSSPE VHYSLRPFRW 960 EQLKYGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 130 | 215 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 216 | KRRRKTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015076164.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2K9ZXJ1 | 0.0 | A0A2K9ZXJ1_PETHY; Squamosa promoter binding-like protein 12b | ||||
STRING | XP_009793310.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1871 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |