PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00437g14022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SBP

Protein Properties

Length: 968aa MW: 107475 Da PI: 7.6389

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00437g14022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.6	9.9e-40	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Peinf101Scf00437g14022.1 141 CCQVQDCQVDLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 218 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-31	135	203	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.906	139	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.23E-37	140	221	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.1E-29	142	215	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.3E-7	240	265	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.22E-7	746	854	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.43E-7	748	855	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.3E-7	748	857	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MEAHNCNGKK SMEWDLNDWK WDGDLFRATP LNSLPLDCRS KEFLPIGSKI QETSRILNLN 60 SLSSGSDEMI LLGNDKGRKE LEKRRRGAVI IDENDEVESL NLKLGEQIYP MMEGEVEKWE 120 EKSGKKKKIG SGNSSNSRVV CCQVQDCQVD LSNAKDYHRR HKVCDVHSKA AKALVGNVMQ 180 RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN KRRRKTHPEN VANGASTNDE RGTNSSDQTK 240 DQDLLSHLLR NLASGAAANN ERNTPALLPA PPDVHNTGTS MGAPKEDYPR PNGDCLIIPA 300 SEMTEKRTGT SDAERGISQN LCASQPDFLY RRKESLPICA NASATTSASV KLIDLNNIYD 360 DSQDGNEKLL NSSSANPGAA SSSCPLWIYH DPHKSSPPSI SGNPRSTPSL STSTSSGEAQ 420 SRTDRIVFKL FGKDPSDFPT ALRKQILDWL SNSPTDIESY IRPGCIILTL YLQMDKSIWK 480 ELYCDLNSSL RKLLNASADS FWQTGWIYTR VNDRVAFLFN GQVVLDTPLP VKSHWSCGIS 540 IVKPIAVCAS ERVQFLVKGF NLSRPTTRLL CALEGQYLVQ GNCTDMMLGA DSCMDHEEIQ 600 SLSFPCLMPN VIGRGFIEVE DHGLSSNFFP FIVAEKDVCS EIRTLESIIE VAETAGGFLG 660 GTEELQARDQ ALDFLHEAGW LLHRISRVGS DANLNLFPFQ RFKWLIQFSI DHDWCAVVKK 720 LLDVLSNGII DVGQQSSLDV ALREVGILHQ AVRRKCRSMV EVLLRYRAHG AFDKSGLQKQ 780 QGGDSYLFRP DEVGPGGLTP LHVVASLSGF ENILDALIDD PGQVGIEVWK SARDSTGLTP 840 NDYACLRGHY SYIHMVQKKI KEKPGDGHVV LNIPGSLLDN SLKKKLSDGH RSVKVASLQT 900 EKSQCRQCKQ KLSYGNSGSS VALYKPAMLS MVAIAAICVC VALLFKSSPE VHYSLRPFRW 960 EQLKYGSI

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MEAHNCNGKK SMEWDLNDWK WDGDLFRATP LNSLPLDCRS KEFLPIGSKI QETSRILNLN  60
SLSSGSDEMI LLGNDKGRKE LEKRRRGAVI IDENDEVESL NLKLGEQIYP MMEGEVEKWE  120
EKSGKKKKIG SGNSSNSRVV CCQVQDCQVD LSNAKDYHRR HKVCDVHSKA AKALVGNVMQ  180
RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN KRRRKTHPEN VANGASTNDE RGTNSSDQTK  240
DQDLLSHLLR NLASGAAANN ERNTPALLPA PPDVHNTGTS MGAPKEDYPR PNGDCLIIPA  300
SEMTEKRTGT SDAERGISQN LCASQPDFLY RRKESLPICA NASATTSASV KLIDLNNIYD  360
DSQDGNEKLL NSSSANPGAA SSSCPLWIYH DPHKSSPPSI SGNPRSTPSL STSTSSGEAQ  420
SRTDRIVFKL FGKDPSDFPT ALRKQILDWL SNSPTDIESY IRPGCIILTL YLQMDKSIWK  480
ELYCDLNSSL RKLLNASADS FWQTGWIYTR VNDRVAFLFN GQVVLDTPLP VKSHWSCGIS  540
IVKPIAVCAS ERVQFLVKGF NLSRPTTRLL CALEGQYLVQ GNCTDMMLGA DSCMDHEEIQ  600
SLSFPCLMPN VIGRGFIEVE DHGLSSNFFP FIVAEKDVCS EIRTLESIIE VAETAGGFLG  660
GTEELQARDQ ALDFLHEAGW LLHRISRVGS DANLNLFPFQ RFKWLIQFSI DHDWCAVVKK  720
LLDVLSNGII DVGQQSSLDV ALREVGILHQ AVRRKCRSMV EVLLRYRAHG AFDKSGLQKQ  780
QGGDSYLFRP DEVGPGGLTP LHVVASLSGF ENILDALIDD PGQVGIEVWK SARDSTGLTP  840
NDYACLRGHY SYIHMVQKKI KEKPGDGHVV LNIPGSLLDN SLKKKLSDGH RSVKVASLQT  900
EKSQCRQCKQ KLSYGNSGSS VALYKPAMLS MVAIAAICVC VALLFKSSPE VHYSLRPFRW  960
EQLKYGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-30	130	215	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	216	KRRRKTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015076164.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A2K9ZXJ1	0.0	A0A2K9ZXJ1_PETHY; Squamosa promoter binding-like protein 12b
STRING	XP_009793310.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12