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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf00416g20001.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
MYB_related |
| Protein Properties |
Length: 177aa MW: 20027.9 Da PI: 5.6229 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf00416g20001.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 30.9 | 6.5e-10 | 3 | 47 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
+WT+ +++ +a + + ++ +W+ Iar++g g+++++++ ++
Peinf101Scf00416g20001.1 3 SWTARQNKKFEEALAIYDKDtpdRWHNIARCVG-GKSAEEVRRHYE 47
6********************************.**********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MASWTARQNK KFEEALAIYD KDTPDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ 60
IPLPNYRSTE SNSTGYANQQ RPSTSLMDRT CSDGSSSVLQ YGVEWTRNHP SDTEPNIPSQ 120
FDFRRDETCT RQLHQPFMDD EHLRPSSSST GSSSVSTSAQ PLESTTTLQP TPKCEPT
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2cjj_A | 1e-29 | 4 | 72 | 11 | 79 | RADIALIS |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CU457811 | 2e-49 | CU457811.8 S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence. |
| GenBank | CU468239 | 2e-49 | CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence. |
| GenBank | HG975443 | 2e-49 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
| GenBank | HG975516 | 2e-49 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
