PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00415g10023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27662.1 Da PI: 7.7207 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 40 | 85 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rWT++E+ l++ + + +G+g+W++I+++ Rt+ q+ s+ qk+ Peinf101Scf00415g10023.1 40 SRWTEDEHRLFLSGLRIHGKGNWAKISKHCLPSRTPQQIASHAQKH 85 59*************************99777************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.283 | 34 | 90 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 38 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-15 | 38 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 38 | 88 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.8E-11 | 39 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-12 | 41 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-12 | 41 | 86 | No hit | No description |
SuperFamily | SSF53067 | 5.18E-12 | 207 | 248 | No hit | No description |
Pfam | PF00022 | 4.4E-11 | 208 | 247 | IPR004000 | Actin family |
Gene3D | G3DSA:3.30.420.40 | 6.9E-12 | 209 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRNNMCREK GKKIKLFGVT ISTTDTTDSA NHGRKITKGS RWTEDEHRLF LSGLRIHGKG 60 NWAKISKHCL PSRTPQQIAS HAQKHFIKIA ETNERRRRNK PSVFDLNLEE TSAEEVLEEN 120 KNVGCEHAIV VFKNQEHDDS SVTLENQEHD ANIVPLETAS AEVVTPIAAI PAATSQYQSF 180 VIPSYSMVQV SAGGGTRVPV SWMVDWEYIQ PIVIDNGTET SKVGYAGDDS PRTVFPSIVG 240 RPRHTGVMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3a5l_C | 5e-14 | 205 | 249 | 1 | 45 | Major actin |
3a5m_C | 5e-14 | 205 | 249 | 1 | 45 | Major actin |
3a5n_C | 5e-14 | 205 | 249 | 1 | 45 | Major actin |
3a5o_C | 5e-14 | 205 | 249 | 1 | 45 | Major actin |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7454 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-19 | MYB family protein |