PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00415g10022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 804aa MW: 89632.9 Da PI: 6.1199

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00415g10022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	6e-13	365	410	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rWT++E+ l++ + + +G+g+W++I + + Rt+ q+ s+ qky Peinf101Scf00415g10022.1 365 SRWTEDEHRLFLSGLRIHGKGNWAKINKDCLLSRTPQQIASHAQKY 410 59*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00268	4.6E-146	1	331	IPR004000	Actin family
SuperFamily	SSF53067	5.18E-40	2	107	No hit	No description
Gene3D	G3DSA:3.30.420.40	3.4E-50	2	139	No hit	No description
Pfam	PF00022	2.1E-110	4	329	IPR004000	Actin family
PROSITE pattern	PS00406	0	7	17	IPR004001	Actin, conserved site
CDD	cd00012	2.54E-14	33	154	No hit	No description
SuperFamily	SSF53067	4.42E-81	102	329	No hit	No description
Gene3D	G3DSA:3.90.640.10	1.2E-23	140	219	No hit	No description
Gene3D	G3DSA:3.30.420.40	1.6E-31	220	329	No hit	No description
PROSITE pattern	PS00432	0	312	320	IPR004001	Actin, conserved site
PROSITE profile	PS51294	17.33	359	415	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-13	363	415	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-8	363	413	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-10	363	410	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-13	364	413	IPR006447	Myb domain, plants
CDD	cd00167	2.40E-9	366	411	No hit	No description
Pfam	PF00249	3.6E-10	366	410	IPR001005	SANT/Myb domain
Pfam	PF00022	1.2E-128	433	804	IPR004000	Actin family
SuperFamily	SSF53067	6.48E-60	433	582	No hit	No description
Gene3D	G3DSA:3.30.420.40	3.9E-70	434	615	No hit	No description
SMART	SM00268	1.5E-188	434	804	IPR004000	Actin family
CDD	cd00012	1.96E-17	437	610	No hit	No description
PRINTS	PR00190	3.9E-37	455	464	IPR004000	Actin family
PRINTS	PR00190	3.9E-37	478	489	IPR004000	Actin family
PRINTS	PR00190	3.9E-37	513	531	IPR004000	Actin family
PROSITE pattern	PS01132	0	533	545	IPR020902	Actin/actin-like conserved site
PRINTS	PR00190	3.9E-37	544	557	IPR004000	Actin family
PRINTS	PR00190	3.9E-37	569	588	IPR004000	Actin family
SuperFamily	SSF53067	7.29E-81	576	804	No hit	No description
Gene3D	G3DSA:3.90.640.10	5.2E-26	616	686	No hit	No description
PRINTS	PR00190	3.9E-37	666	682	IPR004000	Actin family
Gene3D	G3DSA:3.30.420.40	1.2E-33	687	803	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MGQKDVYVGD EALCRRGILT LKYPIEHGYV SEWDAMEQIW NHTYYNELRV APEEHPVLLT 60 EAALNDKVNR EKMTQIMFET LNVPAMYVAT QAVLALYSNG CSTGIVLDSG DGLSQIVPIY 120 EGYALPHAIS RLSLGGSDLT GYLGKILTEI GGYPWGRTMD REHVCSMKET TCYVALDFEQ 180 EIEKAKNCSK SVEMSYELPD GTPFNVGVVR FCCPEVLFQP SLVGMETTGI HEKTYNSIMR 240 CDVDIRNDLF SNIVLSGGST MFPGIADRMS KEITALAPTS MNINVVASPW RKYSVWMGGS 300 ILASLSSFQQ MWISKAEYDE SGPPIVQRKN MCSEKGKKIK LFGVTISTTD TTDSANYGRK 360 ITKGSRWTED EHRLFLSGLR IHGKGNWAKI NKDCLLSRTP QQIASHAQKY FIKIAETKDR 420 RLRNKPSMAD REGTPSLVID NGTGFCKAGF AGDDAPIAVF PSIAGRPRHT GVMVGMGQKD 480 VYVGDEAQSK TGILTLKNPI ELGIVSNWDD MEEIWHHIFY NELRVAPEEH PVLVTEAALN 540 PRVNRERMTE IMFEVFNVPA MYVAIQAVLA LYSTGRITGI VVDSGAALSQ IVPIYEGYAL 600 PHAILRLSLG GRDLTDYFML IVMETGYAYE RTMVRCIFRD MKEKTSYVAL DFEQEVEKAK 660 NCSKSVEGSY ELPDGTIFNV GAVRFRCPEA LFQPSLVGME STGIHEKTYN SIMRCDFDIR 720 KDLFSNIVLS GGSTMFPGIA DRMSKEITAR APSSMKIEVV APPERKYSTW IGGSILASLS 780 CFQQMLIMKG EYDEYGPAIV HKKC

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MGQKDVYVGD EALCRRGILT LKYPIEHGYV SEWDAMEQIW NHTYYNELRV APEEHPVLLT  60
EAALNDKVNR EKMTQIMFET LNVPAMYVAT QAVLALYSNG CSTGIVLDSG DGLSQIVPIY  120
EGYALPHAIS RLSLGGSDLT GYLGKILTEI GGYPWGRTMD REHVCSMKET TCYVALDFEQ  180
EIEKAKNCSK SVEMSYELPD GTPFNVGVVR FCCPEVLFQP SLVGMETTGI HEKTYNSIMR  240
CDVDIRNDLF SNIVLSGGST MFPGIADRMS KEITALAPTS MNINVVASPW RKYSVWMGGS  300
ILASLSSFQQ MWISKAEYDE SGPPIVQRKN MCSEKGKKIK LFGVTISTTD TTDSANYGRK  360
ITKGSRWTED EHRLFLSGLR IHGKGNWAKI NKDCLLSRTP QQIASHAQKY FIKIAETKDR  420
RLRNKPSMAD REGTPSLVID NGTGFCKAGF AGDDAPIAVF PSIAGRPRHT GVMVGMGQKD  480
VYVGDEAQSK TGILTLKNPI ELGIVSNWDD MEEIWHHIFY NELRVAPEEH PVLVTEAALN  540
PRVNRERMTE IMFEVFNVPA MYVAIQAVLA LYSTGRITGI VVDSGAALSQ IVPIYEGYAL  600
PHAILRLSLG GRDLTDYFML IVMETGYAYE RTMVRCIFRD MKEKTSYVAL DFEQEVEKAK  660
NCSKSVEGSY ELPDGTIFNV GAVRFRCPEA LFQPSLVGME STGIHEKTYN SIMRCDFDIR  720
KDLFSNIVLS GGSTMFPGIA DRMSKEITAR APSSMKIEVV APPERKYSTW IGGSILASLS  780
CFQQMLIMKG EYDEYGPAIV HKKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3a5l_C	0.0	1	804	1	374	Major actin
3a5n_C	0.0	1	804	1	374	Major actin
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.; FUNCTION: Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.
UniProt	Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.; FUNCTION: Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028753182.1	0.0	actin-101-like
Refseq	XP_028797499.1	0.0	actin-101-like
Swissprot	A2XLF2	0.0	ACT1_ORYSI; Actin-1
Swissprot	Q10DV7	0.0	ACT1_ORYSJ; Actin-1
TrEMBL	I2AWM3	0.0	I2AWM3_SESIN; Beta-actin
STRING	VIT_12s0178g00200.t01	0.0	(Vitis vinifera)
STRING	XP_008781400.1	0.0	(Phoenix dactylifera)
STRING	XP_008784142.1	0.0	(Phoenix dactylifera)
STRING	XP_010241722.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10580.2	2e-18	MYB_related family protein

Publications ? help Back to Top
Kyozuka J,Shimamoto K Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants. Plant Cell Physiol., 2002. 43(1): p. 130-5 [PMID:11828031] Vitale A,Wu RJ,Cheng Z,Meagher RB Multiple conserved 5' elements are required for high-level pollen expression of the Arabidopsis reproductive actin ACT1. Plant Mol. Biol., 2003. 52(6): p. 1135-51 [PMID:14682614] Mahalakshmi S,Christopher GS,Reddy TP,Rao KV,Reddy VD Isolation of a cDNA clone (PcSrp) encoding serine-rich-protein from Porteresia coarctata T. and its expression in yeast and finger millet (Eleusine coracana L.) affording salt tolerance. Planta, 2006. 224(2): p. 347-59 [PMID:16450172] Khanna HK,Daggard GE Targeted expression of redesigned and codon optimised synthetic gene leads to recrystallisation inhibition and reduced electrolyte leakage in spring wheat at sub-zero temperatures. Plant Cell Rep., 2006. 25(12): p. 1336-46 [PMID:16847628] Xiao B,Huang Y,Tang N,Xiong L Over-expression of a LEA gene in rice improves drought resistance under the field conditions. Theor. Appl. Genet., 2007. 115(1): p. 35-46 [PMID:17426956] Prakash NS, et al. Effect of promoter driving selectable marker on corn transformation. Transgenic Res., 2008. 17(4): p. 695-704 [PMID:17952623] Oszvald M, et al. Expression of cholera toxin B subunit in transgenic rice endosperm. Mol. Biotechnol., 2008. 40(3): p. 261-8 [PMID:18618297] Xiao BZ, et al. Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions. Mol Plant, 2009. 2(1): p. 73-83 [PMID:19529831] Qiu C, et al. Production of marker-free transgenic rice expressing tissue-specific Bt gene. Plant Cell Rep., 2010. 29(10): p. 1097-107 [PMID:20593185] Ambavaram MM,Pereira A Setting up reverse transcription quantitative-PCR experiments. Methods Mol. Biol., 2011. 678: p. 45-54 [PMID:20931371] McElroy D,Rothenberg M,Wu R Structural characterization of a rice actin gene. Plant Mol. Biol., 1990. 14(2): p. 163-71 [PMID:2101689] Reece KS,McElroy D,Wu R Genomic nucleotide sequence of four rice (Oryza sativa) actin genes. Plant Mol. Biol., 1990. 14(4): p. 621-4 [PMID:2102841] McElroy D,Rothenberg M,Reece KS,Wu R Characterization of the rice (Oryza sativa) actin gene family. Plant Mol. Biol., 1990. 15(2): p. 257-68 [PMID:2103449] Shaw DJ,Gray JC Visualisation of stromules in transgenic wheat expressing a plastid-targeted yellow fluorescent protein. Planta, 2011. 233(5): p. 961-70 [PMID:21274561] McElroy D,Zhang W,Cao J,Wu R Isolation of an efficient actin promoter for use in rice transformation. Plant Cell, 1990. 2(2): p. 163-71 [PMID:2136633] Li Y,Liu S,Yu Z,Liu Y,Wu P Isolation and characterization of two novel root-specific promoters in rice (Oryza sativa L.). Plant Sci., 2013. 207: p. 37-44 [PMID:23602097] Ji Y, et al. Defining reference genes for quantitative real-time PCR analysis of anther development in rice. Acta Biochim. Biophys. Sin. (Shanghai), 2014. 46(4): p. 305-12 [PMID:24492537] Wang B,Yu J,Zhu D,Chang Y,Zhao Q Maize ZmRACK1 is involved in the plant response to fungal phytopathogens. Int J Mol Sci, 2014. 15(6): p. 9343-59 [PMID:24865494] Fang P, et al. Assessment of reference gene stability in Rice stripe virus and Rice black streaked dwarf virus infection rice by quantitative Real-time PCR. Virol. J., 2015. 12: p. 175 [PMID:26497487] Kalla R, et al. The promoter of the barley aleurone-specific gene encoding a putative 7 kDa lipid transfer protein confers aleurone cell-specific expression in transgenic rice. Plant J., 1994. 6(6): p. 849-60 [PMID:7849757] Duan X, et al. Transgenic rice plants harboring an introduced potato proteinase inhibitor II gene are insect resistant. Nat. Biotechnol., 1996. 14(4): p. 494-8 [PMID:9630927]