PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00413g09022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 536aa    MW: 60874.6 Da    PI: 7.0791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00413g09022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-0789111427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               ++C f++  G+C+ G+rC+F Hgp
  Peinf101Scf00413g09022.1  89 VPCYFYFN-GYCNKGERCSFLHGP 111
                               69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156638.1E-12666No hitNo description
PROSITE profilePS5010310.39635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092734IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.6293763IPR000571Zinc finger, CCCH-type
SMARTSM003561.33962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.92585112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-685110IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-486111IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-490111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-690114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEEELQKRNT DCVYFLASPL TCKKGIECEY RHSEIARLNP RDCWYWLAGS CLNPTCAFRH  60
APLENRAETS SGSAPAHNKS AVLVNKTNVP CYFYFNGYCN KGERCSFLHG PDDRTPAWKS  120
SKITSDIPDV PTAEKKTSAG SETGPAPVEK HPNSSETGSE AVAHEYIKSK VDLHSMTNNF  180
GEPSASPETS GSPSEEATVV RSDSLVPAEA FTQGGSHLSP DRSSDEEVEH NVEREEWLES  240
SPGFDVLVDD RVEGLSQEDD QKYLVHPEME DREPGERFAG YDFEILEYDD AYPVMRNVSE  300
EELDKSYQNV VNQDINEYES VREILIPAHG RQQFPWKRKL PTVLAPRGRG NVDLRDLLKK  360
RRVIDDPLNH FSRRRDLSRL NAHEQGRDRH HQPQGSRWMP RRLSSKVESS ASFSRVKNDS  420
LLERANHQRR LRQFQGSSYR QRFKNSKRGR SRAFANEAPR RMVSRKRLTE VPMIFSAPKS  480
LAQIKEGKEK VGEDGNSFER TGPSGGSERE DFLGPKPLSE ILRDKRRLGS VVSFCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246777.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A1J6IAT80.0A0A1J6IAT8_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009589189.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911