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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00408g13001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23635.8 Da PI: 4.237 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.6e-08 | 34 | 64 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+WT eEd l++ ++++G g+W++ ar Peinf101Scf00408g13001.1 34 RGSWTVEEDFTLINHIALHGEGRWNSLARSA 64 89**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-9 | 28 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.4E-8 | 29 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.992 | 29 | 68 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.2E-6 | 34 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.85E-5 | 36 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDHQHAKVDL RSKEAACSVN NIQKVEEDDM DFKRGSWTVE EDFTLINHIA LHGEGRWNSL 60 ARSADTLRYL WMPRLVERIQ ASNSSKNQVI QQTSNNNISN NNIIPSMSFT QENSSTTTSS 120 ENSLGTQVIS QVSDTSDCCY NYCTINQNDT LCYGESLTSP TGYFHQEGAL DFRTVDIDDS 180 KLNNQFLDVS DNLWNIEDMW FLQEQLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799769.1 | 9e-44 | PREDICTED: transcription factor MYB108-like, partial | ||||
Refseq | XP_009799770.1 | 2e-43 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_016494481.1 | 2e-43 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1S4C005 | 5e-42 | A0A1S4C005_TOBAC; transcription factor MYB108-like | ||||
TrEMBL | A0A1U7YKK3 | 2e-42 | A0A1U7YKK3_NICSY; transcription factor MYB108-like | ||||
TrEMBL | A0A1U7YLQ8 | 5e-42 | A0A1U7YLQ8_NICSY; transcription factor MYB108-like | ||||
STRING | XP_009799769.1 | 4e-43 | (Nicotiana sylvestris) | ||||
STRING | XP_009799770.1 | 8e-43 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-14 | myb domain protein 78 |